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Bioconductor
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BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
https://bioconductor.org/packages/BSgenome
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Is there any way to circumvent the need for 2bit?
#28
stevenjblair
closed
2 years ago
5
Can I forge an unregistered NCBI? (Am I doing this right?)
#27
stevenjblair
closed
2 years ago
0
Gallus gallus bGalGal1.mat.broiler.GRCg7b
#26
AO-M-Lima
closed
2 years ago
7
New BSgenome - C3H/HeJ Mus musculus
#25
ghost
closed
2 years ago
3
checking DESCRIPTION meta-information ... ERROR
#24
gevro
closed
2 years ago
1
Error: values for symbols PKGVERSION are not single strings
#23
gevro
closed
2 years ago
5
New CHM13 genome
#22
gevro
closed
2 years ago
4
[Question] Create new mask without BSgenomeForge?
#21
monovich
closed
2 years ago
2
forge custom BSgenome error: not a registered NCBI assembly or UCSC genome
#20
santataRU
closed
3 years ago
15
New BSgenome - Mycobacterium tuberculosis
#19
Ellauyz
closed
3 years ago
9
Errors creating BSgenome for rn7
#18
zrcjessica
closed
3 years ago
6
inconsistent getSeq and isCircular behavior
#17
Roleren
opened
3 years ago
2
Forging BSgenome that is not registered
#16
alutservitz
closed
3 years ago
3
What is the latest version?
#15
max1c
closed
3 years ago
2
propagate both genome and seqinfo information from 'subject'
#14
LiNk-NY
closed
3 years ago
2
should matchPattern propagate subject genome?
#13
vjcitn
closed
3 years ago
1
Load a genome - Chlamydomonas reinhardtii v5 genome
#12
mullerbsf
closed
3 years ago
15
forge BSgenome data package from unpublished genome
#11
tamaraprieto
closed
4 years ago
2
create masked BSgenome with RM only
#10
BingbingYuan
closed
3 years ago
7
Issue with BSgenome installation
#9
joseverdezoto
closed
4 years ago
3
Added userMask+invertUserMask option also to the PWM and PDict matchi…
#8
fgeier
closed
1 year ago
1
GRCh37
#7
hpoisner
closed
4 years ago
0
Add New Genome!
#6
hyBio
closed
4 years ago
2
Disagreement between sequences and names for `getSeq,XStringSet`
#5
csoneson
closed
3 years ago
3
Failed to install
#4
bigguscodus
closed
4 years ago
5
Feature request: user-level BSgenome() constructor
#3
hpages
opened
5 years ago
0
Feature request: BSgenomeViews objects accept GPos objects in their 'granges' slot
#2
hpages
opened
5 years ago
0
Clarify documentation of 'exclude' slot in a BSParams
#1
PeteHaitch
closed
4 years ago
1
Support for BSgenomeViews objects in matchPWM
#79
jma1991
opened
6 years ago
3
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