Closed PeteHaitch closed 2 years ago
@lgatto Thank you for the abstract. I accepted it. You can see the schedule at https://biocasia2021.bioconductor.org/workshops/ . Thank you again.
Could you also add @cvanderaa's name, please. Thanks!
@lgatto I added @cvanderaa 's name to https://biocasia2021.bioconductor.org/workshops/ . Sorry for being late to do that.
What would you expect from us?
We personally prefer option 2 due to time constrains, are you fine with that?
Yes, option 2 is fine. As you say, it will be 2 due to time constraints.
Abstract
Mass spectrometry (MS)-based single-cell proteomics (SCP) is an emerging field that requires a dedicated computational environment.
QFeatures
along with its extensionscp
allow for standardized analysis of SCP data. The workshop will start by introducing theQFeatures
class and its functions to perform generic proteomics data analysis. We will then move to SCP and present howscp
extendsQFeatures
to single-cell applications. The remainder of the workshop will be a hands-on session where attendees will be guided through the reproduction of a real-life analysis of published SCP data. Along the reproduction exercise, we will point out to current challenges that still need to be tackled computationally. This workshop is meant for inexperienced users that want to learn how to perform current state-of-the-art analysis of SCP data as well as experienced developers interested in contributing to an emerging and exciting single-cell technology.This workshop is provided as two vignettes. The first vignette provides a general introduction to the
QFeatures
class in the general context of MS-based proteomics data manipulation. The second vignette focuses on single-cell application and introduces thescp
package as an extension ofQFeatures
. This second vignette also provides exercises that give the attendee the opportunity to apply the learned concepts to reproduce a published analysis on a subset of a real data set.Language used in the workshop
English
Convenient day for your Long workshop.
@lgatto Please let us know your preference
Contact Details
laurent.gatto@uclouvain.be
Comment field
Submitted on behalf of Laurent Gatto (@lgatto). Workshop will be a re-run of a workshop presented at BioC 2021 (https://lgatto.github.io/QFeaturesScpWorkshop2021/).
Checklist