Properly check pkg installation calls in vignettes

[almeidasilvaf]

Hi, @lshep and @LiNk-NY

I extended the changes in my previous pull request from earlier today (#169) to include installation functions from {remotes} and {devtools} (install_github, install_gitlab, install_bioc, etc)

Now, BiocCheck::BiocCheck() will flag package installation calls in evaluated vignette code (including install_* functions from {remotes}/{devtools} and install() from {BiocManager} and {devtools}), but it will not misidentify logical functions <tool>_is_installed() as problematic, because they do not end in "install".

• [ ] Update the NEWS file (not applicable)
• [ ] Update the vignette file (not applicable)
• [ ] Add unit tests (optional but highly recommended)
• [x] Passing R CMD build & R CMD check on Bioconductor devel

Best, Fabricio

[LiNk-NY]

Hi Fabricio, Thank you for reporting. I separated the two methods for checking the code (fixed and pattern matching). Pattern matching includes any functions that match the .*install[^ed].* pattern. Best regards, Marcel

[almeidasilvaf]

Thanks a million, @LiNk-NY!

Best, Fabricio