Bioconductor BiocCheck issues

Bioconductor / BiocCheck

http://bioconductor.org/packages/BiocCheck

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issues

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Downloading data from web should be cached

#68 lshep opened 4 years ago
2
Suggest Hubs when large data is present

#67 lshep opened 4 years ago
12
Warn (note?) on lack of Bioconductor interoperability

#66 mtmorgan opened 4 years ago
0
warn on too-brief a Description:

#65 mtmorgan closed 4 years ago
11
warn on use of `message(paste())`

#64 mtmorgan closed 3 years ago
7
sapply --> vapply, and 1:length become WARNING

#63 nturaga closed 3 years ago
5
lintr style code check for Bioconductor

#62 nturaga opened 4 years ago
2
Author / Maintainer check

#61 lshep closed 4 years ago
5
Single colon typos

#60 LiNk-NY closed 4 years ago
2
dontrun donttest tags not relevant for internal functions

#59 LiNk-NY closed 4 years ago
1
don't count @keyword internal : 80% documented man pages

#58 LiNk-NY closed 4 years ago
4
Recommend styler over formatR suggestion

#57 lcolladotor closed 4 years ago
11
finding NEWS.md in package directory

#56 LiNk-NY closed 4 years ago
1
Positive false positive: Infrastructure package, vignette not required.

#55 PeteHaitch closed 4 years ago
1
Check failure on R Markdown templates containing child chunks

#54 mjsteinbaugh closed 3 years ago
4
Checking for units tests in non software packages

#53 MahShaaban closed 5 years ago
1
Naughty behavior: installing files into R_HOME installation without asking for permission

#52 HenrikBengtsson closed 4 years ago
4
Misterious error "* Checking library calls... Error in parse(outfile, keep.source = TRUE) (...) unexpected symbol 6: 7: Create a"

#51 lubianat closed 5 years ago
1
Method to determine the package name

#50 Jiefei-Wang closed 5 years ago
1
copy files in src folder with a filter

#49 Jiefei-Wang closed 5 years ago
1
BiocCheck does not recognise NEWS.md

#48 gabrielodom closed 5 years ago
5
vignettes have vignette designation

#47 lshep closed 5 years ago
0
evaluated code chunks in vignette

#46 lshep closed 5 years ago
2
Author/Maintainer check

#45 lshep closed 5 years ago
0
Add test for Remotes?

#44 smped closed 5 years ago
4
Incomplete error information

#43 Jiefei-Wang closed 5 years ago
3
Dependency on R version

#42 llrs closed 5 years ago
2
BiocCheck breaks when `[` is aliased.

#41 Shians closed 5 years ago
1
Help page BiocCheck() doesn't give correct default package = "."

#40 JoFAM closed 5 years ago
0
.git etc not ignored by checkIndivFileSizes

#39 JoFAM closed 5 years ago
1
Could not run BiocCheck

#38 WT215 closed 6 years ago
4
Workflow should not be mixed with biocViews terms from other hierarchies

#37 mtmorgan closed 6 years ago
1
Error

#36 llrs closed 6 years ago
1
bug fix: exit code when not interactive, closes #34

#35 LiNk-NY closed 6 years ago
4
BiocCheck exit code

#34 LiNk-NY closed 6 years ago
12
only test VignetteEngine on first occurrence

#33 c-mertes closed 6 years ago
0
Check VignetteEngine for rnw files

#32 c-mertes closed 6 years ago
0
Failed BiocCheck when using knitr Engine in rnw vignette

#31 c-mertes closed 6 years ago
7
False positive with system()

#30 LTLA closed 6 years ago
1
Avoid 1:...; false positive on hard-coded ranges

#29 plantarum closed 6 years ago
1
change order of obj init output and imported symbols from packages, closes #26

#28 LiNk-NY closed 6 years ago
2
system file check

#27 lshep closed 6 years ago
0
object (function) order

#26 LiNk-NY closed 6 years ago
0
add default package arg in BiocCheck(), closes #23

#25 LiNk-NY closed 6 years ago
3
Error when checking examples with `\dontrun`

#24 LiNk-NY closed 6 years ago
0
BiocCheck should run as an empty function

#23 LiNk-NY closed 6 years ago
0
Warn when using default `eval=FALSE` setup

#22 LiNk-NY closed 6 years ago
1
Misleading error message for documentation check

#21 assaron closed 6 years ago
2
BiocCheck should not be a Bioc-mirror fork

#20 LiNk-NY closed 7 years ago
2
WARNING with empty/missing \value section in man pages describing data sets

#19 aoles closed 7 years ago
7

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