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Bioconductor
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BiocParallel
Bioconductor facilities for parallel evaluation
https://bioconductor.org/packages/BiocParallel
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Add the load balancer for evenly distributing the tasks across workers
#211
Jiefei-Wang
opened
2 years ago
11
add the deprecated BatchJobsParam to the document "BiocParallel-deprecated"
#210
Jiefei-Wang
closed
2 years ago
0
Improve the readability of the unit test result
#209
Jiefei-Wang
closed
2 years ago
0
Having issue with installing the BiocParallel
#208
DrSunYi
closed
2 years ago
6
allow multiple managers to share the same worker without having log c…
#207
Jiefei-Wang
closed
2 years ago
0
wrong args for environment subassignment
#206
wanlinrong
closed
2 years ago
5
Deprecate BatchJobsParam
#205
Jiefei-Wang
closed
2 years ago
0
Reset the RNG seed stream when the RNG seed is reset
#204
Jiefei-Wang
closed
2 years ago
0
Rewrite DoparParam using the manager interface
#203
Jiefei-Wang
closed
2 years ago
1
update C++ code using cpp11
#202
Jiefei-Wang
closed
2 years ago
7
Do not include the flag -lrt on windows
#201
Jiefei-Wang
closed
2 years ago
2
BiocParallel too strict on type of `options(timeout)`
#200
mtmorgan
closed
2 years ago
0
Suppress the startup message from the package in the worker
#199
Jiefei-Wang
closed
2 years ago
0
'automatic' package attach on workers generates noisy startup messages
#198
mtmorgan
closed
2 years ago
1
Add ... to .manager_send
#197
Jiefei-Wang
closed
2 years ago
0
Add Rstudio files to .gitignore and .Rbuildignore
#196
Jiefei-Wang
closed
2 years ago
0
Add Rstudio files to .gitignore and .Rbuildignore
#195
Jiefei-Wang
closed
2 years ago
0
fix a minor print issue in error handling function
#194
Jiefei-Wang
closed
2 years ago
0
timeout & bpoptions
#193
mtmorgan
closed
2 years ago
4
[patch 3] allow automatically exporting the global variables used in the function
#192
Jiefei-Wang
closed
2 years ago
0
[patch 2] bpfallback
#191
Jiefei-Wang
closed
2 years ago
3
[patch 1] Add 'bpoptions'
#190
Jiefei-Wang
closed
2 years ago
1
BioParallel errors: first remote error: cannot open the connection
#189
MuyaoXi9271
closed
2 years ago
3
allow the user to pass an infinite task number
#188
Jiefei-Wang
closed
2 years ago
2
Check the port status before creating the cluster
#187
Jiefei-Wang
closed
2 years ago
6
allow SnowParam to work with devtools
#186
Jiefei-Wang
closed
2 years ago
0
update the blocklist to exclude rstudio options from the global options
#185
Jiefei-Wang
closed
2 years ago
0
allow automatically exporting the global variables used in the function
#184
Jiefei-Wang
closed
2 years ago
1
Do not export the global environment for the SerialParam
#183
Jiefei-Wang
closed
2 years ago
0
Add task cache feature and enable it by default for the SnowParam
#182
Jiefei-Wang
closed
2 years ago
2
fix a validation issue for BiocParallelParam
#181
Jiefei-Wang
closed
2 years ago
3
implement the task cache for the SnowParam
#180
Jiefei-Wang
closed
2 years ago
4
Disable the time limit in the worker by default
#179
Jiefei-Wang
closed
2 years ago
0
Performance patch1: Simplify the worker implementation
#178
Jiefei-Wang
closed
2 years ago
0
BiocParallel first remote error: cannot open the connection
#177
Begotalavera
closed
2 years ago
10
reset the seed generator type before creating the initial seed
#176
Jiefei-Wang
closed
2 years ago
0
implementing the 6-layer structure
#175
Jiefei-Wang
closed
2 years ago
0
Bpresult2
#174
mtmorgan
closed
2 years ago
0
Allow the progress bar to show the progress of the `bplapply` function
#173
Jiefei-Wang
closed
2 years ago
0
progressbar regression
#172
mtmorgan
closed
2 years ago
2
remove the empty string from the worker output
#171
Jiefei-Wang
closed
2 years ago
0
first error: NA/NaN/Inf in foreign function call (arg 1)
#170
stefnoerman
closed
2 years ago
5
fix the message sink issue for the SerialParam
#169
Jiefei-Wang
closed
2 years ago
0
`bplapply` with `SerialParam` doesn't behave nicely with `debug`
#168
LTLA
closed
2 years ago
4
implement bpresult
#167
mtmorgan
closed
2 years ago
3
report first remote error in entirety
#166
mtmorgan
closed
2 years ago
1
improve error reporting
#165
mtmorgan
closed
2 years ago
0
[Bioc 3.15] Implementing the 6-layer model for the apply function
#164
Jiefei-Wang
closed
2 years ago
1
[Bioc 3.15] Implementing the 6-layer model for the apply function
#163
Jiefei-Wang
closed
2 years ago
1
[Bioc 3.15, patch 1] Implementing L1-L3 layers for bplapply
#162
Jiefei-Wang
closed
2 years ago
1
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