Lawrence_GenomicRanges.Rmd

[lwaldron]

I'm creating an issue for each workshop, to be closed when both 1) the workshop is complete, and 2) it compiles without problems. Please note problems and status updates here.

[lwaldron]

I've converted the vignette GenomicRangesIntroduction.Rnw to get some material in place here.

[lwaldron]

Quitting from lines 76-84 (Lawrence_GenomicRanges.Rmd) 
Error in GRanges(seqnames = Rle(c("chr1", "chr2", "chr1", "chr3"), c(1,  : 
  could not find function "GRanges"
Calls: <Anonymous> ... handle -> withCallingHandlers -> withVisible -> eval -> eval
Execution halted

[LiNk-NY]

Hi Michael, @lawremi Can you give the group a status update on your workshop? Thanks.

[lawremi]

Working on it.

On Wed, Jul 18, 2018 at 1:24 PM, Marcel Ramos notifications@github.com wrote:

Hi Michael, @lawremi https://github.com/lawremi Can you give the group a status update on your workshop? Thanks.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/Bioconductor/BiocWorkshops/issues/30#issuecomment-406062473, or mute the thread https://github.com/notifications/unsubscribe-auth/AAJp7jMJP_52HslQhp9-cey5rShMKwzjks5uH5l0gaJpZM4VGgJ4 .

[lwaldron]

processing file: Lawrence_GenomicRanges.Rmd
Quitting from lines 733-737 (Lawrence_GenomicRanges.Rmd) 
Error in BamFileList(bams) : could not find function "BamFileList"
Calls: <Anonymous> ... handle -> withCallingHandlers -> withVisible -> eval -> eval
Execution halted

[seandavi]

Should be fixed by 8323269.

[LiNk-NY]

I wasn't getting that issue but just in case, I've added it to the chunk.

[lawremi]

Best to ensure that these run independently, too, right?