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Bioconductor / Biostrings

Efficient manipulation of biological strings
https://bioconductor.org/packages/Biostrings
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Storing list of phredquality in a data.frame/table #105

Closed gevro closed 1 year ago

gevro commented 1 year ago

Hi, Is there a way to store a list of phredqualities as a column in a data.frame or data.table? I can't seem to figure out how to do this. data.frame and data.table reject the PhredQuality type, but I would imagine there should be a general way to store a list as a column regardless of the class.

vjcitn commented 1 year ago

S4Vectors DataFrame

gevro commented 1 year ago

Thanks for the info, sorry I'm not familiar with this. Are you able to share the package / command for making an S4 vectors data frame?

gevro commented 1 year ago

Never mind I found how to do it. With the command DataFrame.

hpages commented 1 year ago

@gevro Glad you figured this out. FYI questions related to the use of the Bioconductor software should preferrably be asked on the Bioconductor support site. Use the GitHub issue tracker for bug report or feature requests. Thanks!