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Bioconductor
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Biostrings
Efficient manipulation of biological strings
https://bioconductor.org/packages/Biostrings
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S.h seems to be deprecated
#66
tillea
closed
2 years ago
7
Encoding ASCII up to 255
#65
gevro
opened
2 years ago
33
Package installation fails in latest R 4.2.0-nightly
#64
mtiberti
closed
2 years ago
1
readAxt() and DNAStringSet() are unable to keep lowercase sequences
#63
Abrar2652
closed
2 years ago
1
narrow(x, start=, end=) does not trim quality information
#62
thallinger
closed
2 years ago
2
DNAStringSet(x, start=, end=) loses quality information
#61
thallinger
closed
2 years ago
3
replaceAt with VCF Object
#60
DarioS
closed
2 years ago
4
readDNAStringSet for fasta with long headers
#59
evaegelyng
closed
1 year ago
8
from txdb/getSeq to fasta
#58
madzafv
closed
2 years ago
4
Error when trying to convert string to DNAString
#57
evanpk
closed
4 months ago
1
Is there any way to extract a sequence between two other sequences and allow for mismatches
#56
loukesio
closed
2 years ago
1
Suggestion for Biostrings::translate - option to disambiguate
#55
ammaraziz
closed
1 year ago
1
Ns in DNAstringset greys out all text in console that follows
#54
proychou
closed
2 years ago
4
extract the "start" position of "matchPattern"
#53
jielab
closed
3 years ago
1
trinucleotideFrequency Segmentation Fault if Input Data is Large
#52
DarioS
closed
3 years ago
3
Comparing single base DNAString with single character causes stack error
#51
Shians
opened
3 years ago
0
Moving seqinfo and seqinfo<- and importing GenomeInfoDb
#49
LiNk-NY
closed
3 years ago
7
Error with complement()
#48
didillysquat
closed
3 years ago
3
Key error from new_XStringSet_from_CHARACTER call
#47
morien
closed
3 years ago
2
Added a call to R_CheckUserInterrupt() into find_palindromes().
#46
twmccart
closed
3 years ago
1
Introduce checks for R interrupts in the C code?
#45
twmccart
closed
4 months ago
7
add qualities to fastq output automatically, if input of writeXStringSet is a QualityScaledXStringSet
#44
FelixErnst
closed
2 years ago
4
writeXStringSet on QualityScaledDNAStringSet should automatically set qualities=
#43
LTLA
closed
2 years ago
4
findPalindromes - min.looplength and allow.wobble
#42
digitalwright
closed
3 years ago
7
This commit should fix the problem with the findPalindromes function …
#41
twmccart
closed
3 years ago
4
adding single element to existing DNAStringSetList
#39
jayoung
closed
1 year ago
3
FastqQuality as.matrix is overly complicated
#38
Andreas-Bio
closed
4 years ago
1
readDNAStringSet fails with Legacy Mac (CR) line breaks
#37
FabianRoger
closed
4 months ago
4
writeQualityScaledXStringSet omitted the third line
#36
wydty
closed
4 years ago
1
Error in .Call2("new_XStringSet_from_CHARACTER", class(x0), elementType(x0), : key 51 (char '3') not in lookup table
#35
heleendelbeke
closed
4 years ago
12
matchPattern wildcard for AAstringset
#34
swuyts
opened
4 years ago
3
bugfix for compact ellipsis on windows system
#33
FelixErnst
closed
4 years ago
3
findPalindrome / palindromeLeftArm and mismatches - extends into loop
#32
jayoung
opened
5 years ago
10
findPalindromes and palindromeArmLength - inconsistent arguments
#31
jayoung
closed
4 months ago
10
allow gap characters in translate and codons functions?
#30
jayoung
opened
5 years ago
6
Give `matchProbePair` the `fixed` parameter to allow IUPAC matching?
#29
zachary-foster
closed
4 months ago
9
N50 function cannot operate on genomes larger than 2.1Gbp
#28
oneillkza
closed
5 years ago
2
Remove cast to integer
#27
oneillkza
closed
5 years ago
1
readDNAStringSet for long FASTQ files
#26
HegedusB
closed
5 years ago
7
Misleading show() method for XStringSet objects
#25
hpages
opened
5 years ago
4
translate uses alternative start codons by default
#24
FelixErnst
closed
5 years ago
10
Need for packages in Depends rather than Imports?
#23
mikemc
closed
5 years ago
0
changes to make interaction with the Biostrings classes more easy as …
#22
FelixErnst
closed
5 years ago
7
changes to make interaction with the Biostrings classes more easy …
#21
FelixErnst
closed
5 years ago
14
Stack smashed by writeXStringSet for FASTQ output
#20
LTLA
closed
9 months ago
4
Quality to integer conversion
#19
FelixErnst
closed
5 years ago
7
Consistency of seqinfo getter/setter on DNAStringSet
#18
PeteHaitch
opened
5 years ago
1
Subsetting the SharedRaw_Pool
#17
LTLA
closed
6 years ago
3
Streaming read sequences from a connection with readDNAStringSet
#16
LTLA
closed
6 years ago
3
translate gives wrong results for triplets TTG and CTG
#15
janas-sebastien
closed
5 years ago
5
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