bioc-issue-bot
commented
5 years ago Hi @kevinwang09
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: scMerge
Type: Package
Title: scMerge: Merging multiple batches of scRNA-seq data
Version: 0.99.0
Authors@R: c(
person("Kevin", "Wang", email = "kevin.wang@sydney.edu.au", role = c("aut", "cre")
),
person("Yingxin", "Lin", email = "yingxin.lin@sydney.edu.au", role = c("aut")
),
person("Sydney Bioinformatics and Biometrics Group", email = "bioinformatics@maths.usyd.edu.au", role = c("fnd"))
)
Maintainer: Kevin Wang <kevin.wang@sydney.edu.au>
Description: Remove batch effect and unwanted variations for single-cell RNA-seq expression matrix.
The method includes the function of identification of stably expressed genes (SEG) from single-cell data, and also creating pseudo-replicates from the data.
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends:
R (>= 3.5)
Imports:
BiocParallel,
distr,
doSNOW,
foreach,
igraph,
irlba,
iterators,
kBET,
matrixStats,
M3Drop,
parallel,
pdist,
proxy,
Rcpp (>= 0.12.18),
RcppEigen (>= 0.3.3.4.0),
rsvd,
ruv,
S4Vectors,
SingleCellExperiment,
SummarizedExperiment
LinkingTo:
Rcpp (>= 0.12.18),
RcppEigen,
testthat
RoxygenNote: 6.1.1
Suggests:
BiocStyle,
knitr,
rmarkdown,
scater,
testthat
VignetteBuilder: knitr
biocViews: BatchEffect, GeneExpression, Normalization, RNASeq, Sequencing, SingleCell, Software, Transcriptomics
URL: https://github.com/SydneyBioX/scMerge
BugReports: https://github.com/SydneyBioX/scMerge/issues
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