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PoTRA #1019

Closed ghost closed 5 years ago

ghost commented 5 years ago

Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor

Confirm the following by editing each check box to '[x]'

I am familiar with the essential aspects of Bioconductor software management, including:

For help with submitting your package, please subscribe and post questions to the bioc-devel mailing list.

bioc-issue-bot commented 5 years ago

Hi @Bioconductor-PoTRA

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: PoTRA
Type: Package
Title: PoTRA: Pathways of Topological Rank Analysis
Version: 0.0.1
Author: Chaoxing Li, Li Liu and Valentin Dinu
Maintainer: Valentin Dinu <valentin.dinu@asu.edu>
Description: PoTRA is a PageRank-based method that can be used to detect pathways involved in disease.
License: LGPL
Encoding: UTF-8
LazyData: true
Depends: BiocGenerics, graph, igraph, org.Hs.eg.db
Imports: org.Hs.eg.db, graphite
BiocViews: graph networks
RoxygenNote: 6.1.1
Suggests: knitr
VignetteBuilder: knitr
Built: R 3.5.0; ; 2019-02-19 00:29:48 UTC; windows
bioc-issue-bot commented 5 years ago

A reviewer has been assigned to your package. Learn what to expect during the review process.

IMPORTANT: Please read the instructions for setting up a push hook on your repository, or further changes to your repository will NOT trigger a new build.

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

ca58498 Update DESCRIPTION

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR, WARNINGS". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

ghost commented 5 years ago

I completed the version bump and loaded in the pre-build file for PoTRA. I originally had post-build files loaded into github.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

e47a89c Version: 0.0.4

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

4c5c7e5 Version: 0.0.5

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

ab7688f Version: 0.99.0

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

1a15b78 Version: 0.99.1

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

8fd009b Version: 0.99.2

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

0d20553 Version: 0.99.3

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

3f643a9 Version: 0.99.4

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, TIMEOUT, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

b5fe624 Version: 0.99.5

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "skipped, TIMEOUT, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

e275e74 Version: 0.99.6

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

1bcbd70 Version: 0.99.7

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

ghost commented 5 years ago

The BiocCheck states:

However, I am a subscriber and am registered under the same email, that I used to create the github account for the PoTRA package.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

12295bf Version: 0.99.8

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "WARNINGS, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

ghost commented 5 years ago

The BiocCheck states:

However, I am a subscriber and am registered under the same email, that I used to create the github account for the PoTRA package.

bioc-issue-bot commented 5 years ago

Received a valid push; starting a build. Commits are:

451b739 Version: 0.99.9

bioc-issue-bot commented 5 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "WARNINGS, skipped, TIMEOUT, ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

LiNk-NY commented 5 years ago

Hi Chaoxing Li, Li Liu, and/or Valentin Dinu, @Bioconductor-PoTRA

We would prefer that you do not use the Bioconductor name in your GitHub user name. It makes our users think that you are affiliated with the Bioconductor core team.

With regards to the error, are you sure you registered those accounts with the same email? Please verify your registration. I've checked manually and your email address ***** at asu.edu is not found.

Best regards, Marcel

ghost commented 5 years ago

Hi Marcel,

I’m not listed in the description text. I am part of the post-development team. And am working with Dr. Dinu to submit the PoTRA package to Bioconductor.

I can change the github. I added it because the PoTRA github name was already taken.

Thank you, Margaret

Sent from my iPhone

On Feb 26, 2019, at 10:17 AM, Marcel Ramos notifications@github.com wrote:

Hi Chaoxing Li, Li Liu, and/or Valentin Dinu, @Bioconductor-PoTRA

We would prefer that you do not use the Bioconductor name in your GitHub user name. It makes our users think that you are affiliated with the Bioconductor core team.

With regards to the error, are you sure you registered those accounts with the same email? Please verify your registration. I've checked manually and your email address is not found.

Best regards, Marcel

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.

LiNk-NY commented 5 years ago

Hi Margaret, @Bioconductor-PoTRA

The maintainer of the package has to be registered on Bioc-devel and the support site. Please have the owner of the ***** at asu.edu email address register for those websites.

Best, Marcel

LiNk-NY commented 5 years ago

Hi Margaret, Can you give an update on the status of the warnings/errors?

Thanks, Marcel

LiNk-NY commented 5 years ago

DUPLICATE of #1029 https://github.com/Bioconductor/Contributions/issues/1029