bioc-issue-bot
commented
5 years ago Hi @SimoneTiberi
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: BANDITS
Type: Package
Title: BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Version: 0.99.0
Date: 2019-02-19
Author: Simone Tiberi
Maintainer: Simone Tiberi <simone.tiberi@uzh.ch>
Description: BANDITS is a Bayesian hierarchical model for detecting differential splicing of genes and transcripts,
via differential transcript usage (DTU),
between two or more conditions.
The method uses a Bayesian hierarchical framework, which allows for sample specific proportions
in a Dirichlet-Multinomial model, and samples the allocation of fragments to the transcripts.
Parameters are inferred via Markov chain Monte Carlo (MCMC) techniques and a DTU test is performed
via a multivariate Wald test on the posterior densities for the average relative abundance of transcripts.
biocViews: DifferentialSplicing, AlternativeSplicing, Bayesian, Genetics,
RNASeq, Sequencing, DifferentialExpression, GeneExpression, MultipleComparison,
Software, WorkflowStep, Transcription
License: GPL (>= 3)
Depends: R (>= 3.6.0)
Imports: Rcpp, doRNG, MASS, data.table, doParallel, parallel, foreach, methods, stats, graphics, ggplot2,
DRIMSeq, BiocParallel
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr,
tximport, BiocStyle
SystemRequirements: C++11
ByteCompile: false
VignetteBuilder: knitr
RoxygenNote: 6.1.1
URL: https://github.com/SimoneTiberi/BANDITS
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