bioc-issue-bot
commented
5 years ago Hi @chemokine
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: SBGNview
Title: Overlay omics data onto SBGN pathway diagram
Description:
SBGNview is a tool set for visualizing omics data on SBGN pathway maps.
Given omics data and a SBGN-ML file with layout information,
SBGNview can display omics data as colors on glyphs and output image files.
SBGNview provides extensive options to control glyph and edge features
(e.g. color, line width etc.). To facilitate pathway based analysis,
SBGNview also provides functions to extract glyph information and pairwise interactions from SBGN-ML files.
SBGNview can map a large collection of gene, protein and compound ID typs to glyphs.
Version: 0.1
Authors:
Xiaoxi Dong, Weijun Luo
Author:
Xiaoxi Dong, Weijun Luo
Maintainer: Xiaoxi Dong <dfdongxiaoxi@gmail.com>
Depends:
R (>= 2.6.0),
xml2,
pathview,
rsvg,
igraph
Imports: Rdpack
RdMacros: Rdpack
License: EPL
LazyLoad: Yes
Collate:
SBGN.to.SVG.R
parsing.utilities.R
plot.utilities.R
RoxygenNote: 6.1.1
Suggests:
knitr,
rmarkdown
VignetteBuilder: knitr
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mtmorgan
chemokine
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