bioc-issue-bot
commented
5 years ago Hi @asenabouth
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: ascend
Type: Package
Title: ascend - Analysis of Single Cell Expression, Normalisation, and Differential expression
Version: 0.9.94
Author: c(person("Anne", "Senabouth", email = "a.senabouth@garvan.org.au", rol = "aut, cre"), person("Quan", "Nguygen", email = "quan.nguyen@imb.uq.edu.au", rol = "aut"))
Maintainer: Anne Senabouth <a.senabouth@garvan.org.au>
Description: Provides a series of tools for cleaning, normalisation and analysis of data produced by single cell experiments.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports:
utils,
stats,
fields,
grDevices,
graphics,
ggplot2,
ggbeeswarm,
RColorBrewer,
gridExtra,
dynamicTreeCut,
dendextend,
data.table,
reshape2,
dplyr,
tidyr,
MASS,
BiocGenerics,
umap,
Rtsne,
irlba,
fastcluster,
Rcpp,
RcppArmadillo
Suggests:
scater,
scran,
Seurat,
scone,
devtools,
knitr,
locfit,
rmarkdown,
testthat,
KernSmooth,
DESeq,
DESeq2
VignetteBuilder: knitr
Depends: R (>= 3.6.0),
methods,
Matrix,
S4Vectors,
SummarizedExperiment,
SingleCellExperiment,
BiocParallel
Collate:
'RcppExports.R'
'ascend.R'
'ascend_DESeq.R'
'ascend_DESeq2.R'
'ascend_confoundingfactors.R'
'ascend_objects.R'
'ascend_getters.R'
'ascend_setters.R'
'ascend_methods.R'
'ascend_cellranger.R'
'ascend_dimreduction.R'
'ascend_clustering.R'
'ascend_diffexpression.R'
'ascend_filtering.R'
'ascend_imports.R'
'ascend_normalisation.R'
'ascend_plots.R'
'ascend_scran.R'
'ascend_subsetters.R'
'ascend_utilities.R'
'data.R'
biocViews: Software,
WorkflowStep,
Preprocessing,
QualityControl,
Normalization,
BatchEffect,
GeneExpression,
SingleCell,
DifferentialExpression
LinkingTo:
Rcpp,
RcppArmadillo
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dvantwisk
asenabouth
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