RNAmodR.ML

[FelixErnst]

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• Repository: https://github.com/FelixErnst/RNAmodR.ML

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[bioc-issue-bot]

Hi @FelixErnst

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: RNAmodR.ML
Type: Package
Title: Detecting patterns of post-transcriptional modifications using machine learning
Version: 0.99.0
Date: 2019-06-10
Authors@R: c(person("Felix G.M.",
          "Ernst", 
          email = "felix.gm.ernst@outlook.com", 
          role = c("aut", "cre"),
          comment = c(ORCID = "0000-0001-5064-0928")),
   person("Denis L.J.", 
          "Lafontaine", 
          email = "denis.lafontaine@ulb.ac.be", 
          role = c("ctb")))
Description: RNAmodR.ML extend the functionality of the RNAmodR package and 
    classical detection strategies towards detection through machine learning
    models. RNAmodR.ML provides classes, functions and an example workflow to 
    establish a detection stratedy, which can be packaged.
biocViews: 
    Software, Infrastructure, WorkflowStep, Visualization, Sequencing
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
Depends:
    R (>= 3.6),
    RNAmodR
Imports:
    methods,
    assertive,
    BiocGenerics,
    S4Vectors,
    IRanges,
    GenomicRanges,
    stats,
    ranger
Suggests:
    BiocStyle,
    knitr,
    rmarkdown,
    testthat,
    RNAmodR.Data,
    RNAmodR.AlkAnilineSeq,
    GenomicFeatures,
    Rsamtools,
    rtracklayer,
    keras
Collate: 
    'RNAmodR.ML.R'
    'AllGenerics.R'
    'ModifierMLModel-class.R'
    'ModifierML-class.R'
    'ModifierML-data.R'
    'ModifierMLkeras-class.R'
    'ModifierMLranger-class.R'
    'RNAmodR.ML.example.R'
RoxygenNote: 6.1.1
VignetteBuilder: knitr
BugReports: https://github.com/FelixErnst/RNAmodR.ML/issues
URL: https://github.com/FelixErnst/RNAmodR.ML

[bioc-issue-bot]

A reviewer has been assigned to your package. Learn what to expect during the review process.

IMPORTANT: Please read the instructions for setting up a push hook on your repository, or further changes to your repository will NOT trigger a new build.

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

cb84453 removed Rproj file

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

98d8e2a again removed some blocking files

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings on all platforms.

Please see the build report for more details.

[bioc-issue-bot]

Your package has been accepted. It will be added to the Bioconductor Git repository and nightly builds. Additional information will be posed to this issue in the next several days.

Thank you for contributing to Bioconductor!

[mtmorgan]

The master branch of your GitHub repository has been added to Bioconductor's git repository.

To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/FelixErnst.keys is not empty), then no further steps are required. Otherwise, do the following:

1. Add an SSH key to your github account
2. Submit your SSH key to Bioconductor

See further instructions at

https://bioconductor.org/developers/how-to/git/

for working with this repository. See especially

https://bioconductor.org/developers/how-to/git/new-package-workflow/ https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

to keep your GitHub and Bioconductor repositories in sync.

Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at

https://bioconductor.org/checkResults/

(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using BiocManager::install("RNAmodR.ML"). The package 'landing page' will be created at

https://bioconductor.org/packages/RNAmodR.ML

If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.