bioc-issue-bot
commented
5 years ago Hi @jhsiao999
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Encoding: UTF-8
Type: Package
Package: peco
Version: 0.99.0
Date: 2019-09-11
Title: A Supervised Approach for **P**r**e**dicting **c**ell Cycle
Pr**o**gression using scRNA-seq data
Authors@R: c(
person("Chiaowen Joyce","Hsiao", email="joyce.hsiao1@gmail.com",
role=c("aut","cre")),
person("Matthew", "Stephens", email="stephens999@gmail.com", role="aut"),
person("John", "Blischak", email = "jdblischak@gmail.com", role="ctb"),
person("Peter", "Carbonetto", email = "peter.carbonetto@gmail.com",
role="ctb"))
Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com>
Description: Our approach provides a way to assign continuous cell cycle phase
using scRNA-seq data, and consequently, allows to identify cyclic trend
of gene expression levels along the cell cycle. This package provides method
and training data, which includes scRNA-seq data collected from 6 individual
cell lines of induced pluripotent stem cells (iPSCs), and also continuous cell
cycle phase derived from FUCCI fluorescence imaging data.
URL: https://github.com/jhsiao999/peco
BugReports: https://github.com/jhsiao999/peco/issues
License: GPL (>= 3)
Depends: R (>= 3.5)
Imports:
assertthat,
Biobase,
circular,
conicfit,
doParallel,
foreach,
genlasso,
graphics,
methods,
parallel,
stats
Suggests:
knitr,
rmarkdown
Enhances:
parallel
Remotes:
glmgen/genlasso
biocViews:
Sequencing, RNASeq, GeneExpression, Transcriptomics, SingleCell,
Software, StatisticalMethod, Classification, Visualization
VignetteBuilder: knitr
RoxygenNote: 6.1.1
mtmorgan
jhsiao999
LiNk-NY
lshep
Kayla-Morrell
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