bioc-issue-bot
commented
5 years ago Hi @cpanse
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: tartare
Type: Package
Title: Raw ground spectra recorded on Thermo Fisher Scientific mass
spectrometers
Version: 0.0.1
Authors@R: c(person(given = "Christian", family = "Panse",
email = "cp@fgcz.ethz.ch", role = c("aut", "cre"),
comment = c(ORCID = "0000-0003-1975-3064")),
person(given = "Tobias", family = "Kockmann",
email = "Tobias.Kockmann@fgcz.ethz.ch", role = "aut",
comment = c(ORCID = "0000-0002-1847-885X")))
Depends: R (>= 3.6),
AnnotationHub (>= 2.16),
ExperimentHub (>= 1.0)
Imports:
utils
Suggests:
knitr,
testthat
Description: provides raw files (size=215MBytes)recorded on different Liquid
Chromatography Mass Spectrometry (LC-MS) instruments. All included MS
instruments are manufactured by Thermo Fisher Scientific and belong to the
Orbitrap Tribrid or Q Exactive Orbitrap family of instruments. Despite their
common origin and shared hardware components (e.g. Orbitrap mass analyser),
the above instruments tend to write data in different "dialects" in a shared
binary file format (.raw). The intention behind tartare is to provide complex
but slim real-world files that can be used to make code robust with respect
to this diversity. In other words, it is intended for enhanced unit testing.
The package is considered to be used with the
rawDiag package (Trachsel, 2018 <doi:10.1021/acs.jproteome.8b00173>) and the
Spectra MsBackends.
URL: https://github.com/cpanse/tartare
BugReports: https://github.com/cpanse/tartare/issues
Encoding: UTF-8
NeedsCompilation: no
biocViews: ExperimentData, MassSpectrometryData
RoxygenNote: 6.1.1
License: GPL-3
VignetteBuilder: knitr
Collate:
'zzz.R'
cpanse
lshep
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
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[x] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.
[x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput mass spec data.
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