bioc-issue-bot
commented
4 years ago Hi @selcenari
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Type: Package
Package: ceRNAnetsim
Title: Regulation Simulator of Interaction between miRNA and
Competing RNAs (ceRNA)
Version: 0.99.0
Authors@R:
c(person(given = "Selcen",
family = "Ari Yuka",
role = c("aut", "cre"),
email = "selcenarii@gmail.com",
comment = c(ORCID = "0000-0002-0028-2453")),
person(given = "Alper",
family = "Yilmaz",
role = "aut",
email = "alperyilmaz@gmail.com",
comment = c(ORCID = "0000-0002-8827-4887")))
Description: This package simulates regulations of ceRNA
(Competing Endogenous) expression levels after a expression level
change in one or more miRNA/mRNAs. The methodolgy adopted by the
package has potential to incorparate any ceRNA (circRNA, lincRNA,
etc.) into miRNA:target interaction network. The package basically
distributes miRNA expression over available ceRNAs where each ceRNA
attracks miRNAs proportional to its amount. But, the package can
utilize multiple parameters that modify miRNA effect on its target
(seed type, binding energy, binding location, etc.). The functions
handle the given dataset as graph object and the processes progress
via edge and node variables.
License: GPL (>= 3.0)
URL: https://github.com/selcenari/ceRNAnetsim
BugReports: https://github.com/selcenari/ceRNAnetsim/issues
Depends:
R (>= 3.6),
dplyr,
tidygraph
Imports:
furrr,
rlang,
tibble,
ggplot2,
ggraph,
igraph,
purrr,
tidyr,
future
Suggests:
knitr,
png,
rmarkdown,
testthat,
covr
VignetteBuilder:
knitr
biocViews:
NetworkInference,
SystemsBiology,
Network,
GraphAndNetwork,
Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
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selcenari
Kayla-Morrell
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