bioc-issue-bot
commented
4 years ago Hi @ch4rr0
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: snapcount
Type: Package
Title: R/Bioconductor Package for interfacing with Snaptron for rapid querying of expression counts
Version: 0.99.0
Author: Rone Charles
Maintainer: Rone Charles <rcharle8@jh.edu>
Description: snapcount is a client interface to the Snaptron webservices
which support querying by gene name or genomic region.
Results include raw expression counts derived from alignment of RNA-seq samples
and/or various summarized measures of expression across one or more regions/genes
per-sample (e.g. percent spliced in).
Depends:
R (>= 3.2.0)
Imports:
R6,
httr,
rlang,
purrr,
jsonlite,
assertthat,
data.table,
Matrix,
magrittr,
stringr,
stats,
IRanges,
GenomicRanges,
SummarizedExperiment
Suggests:
BiocManager,
bit64,
covr,
knitcitations,
knitr (>= 1.6),
JunctionSeq,
devtools,
BiocStyle (>= 2.5.19),
rmarkdown (>= 0.9.5),
testthat (>= 2.1.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Roxygen: list(markdown = TRUE, roclets = c("rd", "namespace", "collate"))
URL: https://github.com/langmead-lab/snapcount
BugReports: https://github.com/langmead-lab/snapcount/issues
biocViews: Coverage, GeneExpression, RNASeq, Sequencing, Software, DataImport
VignetteBuilder: knitr
ByteCompile: true
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[x] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.
[x] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.
[x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
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