bioc-issue-bot
commented
4 years ago Hi @xiangpin
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: MicrobiotaProcess
Type: Package
Title: an package for analysis, visualization and biomarker discovery of microbiome
Version: 0.99.0
Authors@R: c(person("Shuangbin", "Xu", email = "xshuangbin@163.com", role = c("aut", "cre"), comment=c(ORCID="0000-0003-3513-5362")),
person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "ctb")))
Description: MicrobiotaProcess is an R package for analysis, visualization and
biomarker discovery of microbial datasets. It supports calculating alpha
index and provides functions to visualize rarefaction curves. Moreover,
it also supports visualizing the abundance of taxonomy of samples. And It
also provides functions to perform the PCA, PCoA and hierarchical cluster
analysis. In addition, MicrobiotaProcess also provides a method for
the biomarker discovery of metagenome or other datasets.
Depends:
R (>= 3.6)
Imports:
ape,
plyr,
tidyr,
ggplot2,
phyloseq,
magrittr,
dplyr,
Biostrings,
ggrepel,
vegan,
rentrez,
reshape,
zoo,
ggtree,
tidytree,
gtools,
MASS,
methods,
randomForest,
rlang,
tibble,
grDevices,
stats,
utils,
coin,
ggsignif,
scales,
Rmisc,
DECIPHER,
biomformat,
yaml,
phangorn,
patchwork
Suggests:
DT,
prettydoc,
treeio,
tidyverse,
testthat,
knitr,
nlme
License: GPL (>= 2.0)
URL: https://github.com/YuLab-SMU/MicrobiotaProcess/
BugReports: https://github.com/YuLab-SMU/MicrobiotaProcess/issues
VignetteBuilder: knitr
ByteCompile: true
Encoding: UTF-8
LazyData: false
biocViews: Visualization, Microbiome, Software, MultipleComparison, FeatureExtraction
RoxygenNote: 7.0.2
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