bioc-issue-bot
commented
4 years ago Hi @nilseling
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: cytomapper
Version: 0.99.0
Date: 2020-03-30
Title: Visualization of highly multiplexed imaging cytometry data in R
Description:
Highly multiplexed imaging cytometry acquires the single-cell expression of
selected proteins in a spatially-resolved fashion. These measurements can be
visualized across multiple length-scales. First, pixel-level intensities
represent the spatial distributions of feature expression with highest
resolution. Second, after segmentation, expression values or cell-level
metadata (e.g. cell-type information) can be visualized on segmented cell
areas. This package contains functions for the visualization of multiplexed
read-outs and cell-level information obtained by multiplexed imaging
cytometry. The main functions of this package allow 1. the visualization of
pixel-level information across multiple channels and 2. the display of
cell-level information (expression and/or metadata) on segmentation masks.
Authors@R:
c(person("Nils", "Eling", role = c("aut", "cre"),
email = "nils.eling@dqbm.uzh.ch",
comment = c(ORCID = "0000-0002-4711-1176")),
person("Nicolas", "Damond", role = c("aut"),
email = "nicolas.damond@dqbm.uzh.ch",
comment = c(ORCID = "0000-0003-3027-8989")))
License: GPL (>= 2)
Depends:
R (>= 4.0),
EBImage,
SingleCellExperiment,
methods
Imports:
S4Vectors,
RColorBrewer,
viridis,
utils,
SummarizedExperiment,
tools,
graphics,
raster,
grDevices,
stats
Suggests:
BiocStyle,
knitr,
rmarkdown,
testthat
biocViews: ImmunoOncology, Software, SingleCell, OneChannel, TwoChannel, MultipleComparison, Normalization, DataImport
VignetteBuilder: knitr
URL: https://github.com/BodenmillerGroup/cytomapper
BugReports: https://github.com/BodenmillerGroup/cytomapper/issues
RoxygenNote: 7.1.0
Encoding: UTF-8
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