bioc-issue-bot
commented
4 years ago Hi @ChristopherEeles
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: RadioGx
Type: Package
Title: Analysis of Large-Scale Radio-Genomic Data
Version: 0.99.3
Date: 2020-03-30
Authors@R: c(
person("Venkata","Manem", email = "mail2mvskumar@gmail.com",
role = c("aut")),
person("Petr","Smirnov", email = "petr.smirnov@uhnresearch.ca",
role = c("aut")),
person("Ian","Smith", email = "ianc.smith@mail.utoronto.ca",
role = c("aut")),
person("Meghan","Lambie", email = "megan.lambie@mail.utoronto.ca",
role = c("aut")),
person("Christopher","Eeles", email = "christopher.eeles@uhnresearch.ca",
role = c("aut")),
person("Scott", "Bratman", email = "scott.bratman@rmp.uhn.ca",
role = c("aut")),
person("Benjamin","Haibe-Kains", email = "benjamin.haibe.kains@utoronto.ca",
role = c("aut","cre"))
)
Description: Computational tool box for radio-genomic analysis which integrates
radio-response data, radio-biological modelling and comprehensive cell line
annotations for hundreds of cancer cell lines. The 'RadioSet' class enables
creation and manipulation of standardized datasets including information
about cancer cells lines, radio-response assays and dose-response indicators.
Included methods allow fitting and plotting dose-response data using
established radio-biological models along with quality control to validate
results. Additional functions related to fitting and plotting dose response
curves, quantifying statistical correlation and calculating area under the
curve (AUC) or survival fraction (SF) are included. For more details please
see the included documentation, references, as well as:
Manem, V. et al (2018) <doi:10.1101/449793>.
License: GPL-3
VignetteBuilder: knitr
VignetteEngine: knitr::rmarkdown
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0), CoreGx
Imports:
SummarizedExperiment,
S4Vectors,
Biobase,
parallel,
BiocParallel,
RColorBrewer,
caTools,
magicaxis,
methods,
reshape2,
scales,
grDevices,
graphics,
stats,
utils,
assertthat,
matrixStats
Suggests:
rmarkdown,
BiocStyle,
knitr,
pander
biocViews: Software, Pharmacogenetics, QualityControl, Survival
RoxygenNote: 7.1.0
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nturaga
ChristopherEeles
mtmorgan
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