bioc-issue-bot
commented
4 years ago Hi @js2264
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: periodicDNA
Type: Package
Title: Set of tools to identify periodic occurrences of k-mers in
DNA sequences
Version: 0.3.2
Date: 2020-05-03
Encoding: UTF-8
Author: Jacques Serizay
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>
Description: The functions in this package provide a straightforward
approach to identify periodic occurrences of k-mers or
oligonucleotides in longer sequences such as regulatory
elements.
URL: https://github.com/js2264/periodicDNA
BugReports: https://github.com/js2264/periodicDNA/issues
RoxygenNote: 7.1.0
Depends:
R (>= 3.5),
Biostrings,
GenomicRanges,
IRanges
Imports:
S4Vectors,
rtracklayer,
stats,
GenomeInfoDb,
magrittr,
zoo,
ggplot2,
methods,
parallel,
cowplot
Suggests:
BSgenome.Scerevisiae.UCSC.sacCer3,
BSgenome.Celegans.UCSC.ce11,
BSgenome.Dmelanogaster.UCSC.dm6,
BSgenome.Drerio.UCSC.danRer10,
BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Mmusculus.UCSC.mm10,
testthat,
covr,
knitr,
rmarkdown,
pkgdown
VignetteBuilder: knitr
biocViews:
SequenceMatching,
MotifDiscovery,
MotifAnnotation,
Sequencing,
Coverage,
Alignment,
DataImport
License: GPL-3 + file LICENSE
js2264
lshep
hpages
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