bioc-issue-bot
commented
4 years ago Hi @jasonratcliff
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: aggregateBioVar
Type: Package
Title: Differential Gene Expression Analysis for Multi-subject scRNA-seq
Version: 0.99.0
Authors@R: c(
person(given = "Jason", family = "Ratcliff",
email = "jason-ratcliff@uiowa.edu", role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-7079-334X")),
person(given = "Andrew", family = "Thurman",
email = "andrew.thurman2@gmail.com", role = "aut"),
person(given = "Michael", family = "Chimenti",
email = "michael-chimenti@uiowa.edu", role = "ctb"),
person(given = "Alejandro", family = "Pezzulo",
email = "alejandro-pezzulo@uiowa.edu", role = "ctb")
)
URL: https://github.com/jasonratcliff/aggregateBioVar
BugReports: https://github.com/jasonratcliff/aggregateBioVar/issues
Description: For single cell RNA-seq data collected from more than
one subject (e.g. biological sample or technical replicates),
this package contains tools to summarize single cell gene expression
profiles at the level of subject. A SingleCellExperiment object is taken as
input and converted to a list of SummarizedExperiment objects, where each
list element corresponds to an assigned cell type.
The SummarizedExperiment objects contain aggregate gene-by-subject
count matrices and inter-subject column metadata for individual subjects
that can be processed using downstream bulk RNA-seq tools.
License: GPL-3
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
biocViews: Software, SingleCell, RNASeq, Transcriptomics,
Transcription, GeneExpression, DifferentialExpression
Depends:
R (>= 4.0)
Imports:
stats,
methods,
S4Vectors,
SummarizedExperiment,
SingleCellExperiment,
Matrix,
tibble,
rlang
Suggests:
BiocStyle,
magick,
knitr,
rmarkdown,
testthat,
BiocGenerics,
DESeq2,
magrittr,
dplyr,
ggplot2,
cowplot,
ggtext,
RColorBrewer,
pheatmap,
viridis
PeteHaitch
jasonratcliff
lshep
hpages
mtmorgan
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