bioc-issue-bot
commented
4 years ago Hi @max-mcgrath
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: MSPrep
Title:
Package for Summarizing, Filtering, Imputing, and Normalizing Metabolomics
Data
Version: 0.99.0
Authors@R:
c(person("Max", "McGrath",
email = "max.mcgrath@ucdenver.edu",
role = c("aut", "cre")),
person("Matt", "Mulvahill",
email = "matt.mulvahill@gmail.com",
role = c("aut")),
person("Grant", "Hughes",
email = "",
role = c("aut")),
person("Sean", "Jacobson",
email = "jacobsonseanr@gmail.com",
role = c("aut")),
person("Harrison", "Pielke-lombardo",
email = "harrison.pielke-lombardo@cuanschutz.edu",
role = c("aut")),
person("Katerina", "Kechris",
email = "Katerina.Kechris@cuanschutz.edu",
role = c("aut", "cph", "ths")))
Description:
Package performs summarization of replicates, filtering by frequency, several
different options for imputing missing data, and a variety of options for
transforming, batch correcting, and normalizing data.
URL: https://github.com/KechrisLab/MSPrep
BugReports: https://github.com/KechrisLab/MSPrep/issues
Depends:
R (>= 4.0)
Imports:
SummarizedExperiment,
S4Vectors,
pcaMethods (>= 1.24.0),
VIM,
crmn,
preprocessCore,
sva,
dplyr (>= 0.7),
tidyr,
tibble (>= 1.2),
magrittr,
rlang,
stats,
stringr,
methods,
ddpcr
Suggests:
BiocStyle,
knitr,
rmarkdown,
testthat (>= 1.0.2)
VignetteBuilder: knitr
LazyData: true
NeedsCompilation: no
License: GPL-3
biocViews: Metabolomics,
MassSpectrometry,
Preprocessing
Encoding: UTF-8
RoxygenNote: 7.1.1
lshep
max-mcgrath
mtmorgan
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
Confirm the following by editing each check box to '[x]'
[x] I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.
[x] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.
[x] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.
[x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
[x] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.
I am familiar with the essential aspects of Bioconductor software management, including:
For help with submitting your package, please subscribe and post questions to the bioc-devel mailing list.