bioc-issue-bot
commented
7 years ago Hi @wrightrc
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: flowTime
Title: Annotation and analysis of biological dynamic systems by flow cytometry
data
Version: 0.99.0
Authors@R: c(person("R. Clay", "Wright", email = "wright.clay@gmail.com", role = c("aut", "cre")), person("Nick", "Bolten", email = "nbolten@gmail.com", role = c("aut")),person("Edith", "Pierre-Jerome", email = "", role = c("aut")))
Description: This package was developed for analysis of both dynamic and steady state experiments
examining the function of gene regulatory networks in yeast (strain W303)
expressing fluorescent reporter proteins using a BD Accuri C6 and SORP cytometers. However, the
functions are for the most part general and may be
adapted for analysis of other organisms using other flow cytometers. Functions in this
package facilitate the annotation of flow cytometry data with experimental metadata, as
is requisite for dissemination and general ease-of-use. Functions for creating, saving
and loading gate sets are also included.
In the past, we have typically generated summary statistics for
each flowset for each timepoint and then annotated and analyzed these
summary statistics. This method loses a great deal of the power that comes
from the large amounts of individual cell data generated in flow cytometry,
by essentially collapsing this data into a bulk measurement after subsetting.
In addition to these summary functions, this package also contains
functions to facilitate annotation and analysis of steady-state or time-
lapse data utilizing all of the data collected from the thousands of individual
cells in each sample.
Depends:
R (>= 2.14.0),
flowCore,
plyr,
dplyr
License: Artistic-2.0 + file LICENSE
LazyData: true
biocViews:
FlowCytometry,
TimeCourse,
Visualization,
DataImport,
CellBasedAssays
Suggests:
knitr,
rmarkdown,
flowViz,
ggplot2,
BiocGenerics,
moments
VignetteBuilder: knitr
RoxygenNote: 5.0.1
vobencha
wrightrc
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