bioc-issue-bot
commented
3 years ago Hi @demar01
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: RIC
Title: RIC (RNA interaction capture)
Version: 0.99.0
Authors@R:
person(given = c("Maria","Ni"),
family = c("Dermit","Shuai"),
role = c("aut","cre"),
comment = c(ORCID = "0000-0002-6287-8367",ORCID = "")
email = c("maria.dermit@qmul.ac.uk","nishuai@yahoo.com"))
Description: RIC package automates search for RBP from cRIC (RNA-interactome
capture)proteomics experiments. It requires tabular input (i.e. peptides.txt
files) generated by MaxQuant software for quantitative analysis of raw mass
spectrometry data. It uses QFeatures infrastructure to handle and process
high-throughput mass spectrometry data. Functions provided in the package
enable bacth correction and peptide aggregation as well as vizualization for
intensity distribition across replicates, moderated statistical analysis
adjusted for multiple hypothesis testing and scatter and volcano plots
visualizations, scatter and volcano plots.
License: GPL-2
Encoding: UTF-8
LazyData: true
Depends:
R (>= 4.1), ggplot2
RoxygenNote: 7.1.1
Imports:
assertthat,
dplyr,
stringr,
tibble,
tidyr,
purrr,
limma,
QFeatures,
rmarkdown,
magrittr,
tidyverse,
Biostrings
Suggests:
testthat (>= 3.0.0),
BiocStyle,
knitr,
covr
biocViews: Infrastructure, Proteomics, MassSpectrometry
VignetteBuilder: knitr
Config/testthat/edition: 3
mtmorgan
demar01
lshep
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