bioc-issue-bot
commented
3 years ago Hi @reef103
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: genomicInstability
Version: 0.99.0
Date: 2020-02-21
Title: Genomic Instability estimation for scRNA-Seq
Authors@R: c(person("Mariano", "Alvarez", role=c("aut", "cre"),
email="reef103@gmail.com"),
person("Pasquale", "Laise", role="aut",
email="plaise@darwinhealth.com"),
person("DarwinHealth", role="cph"))
Depends:
R (>= 4.0.0),
checkmate
Suggests:
SingleCellExperiment,
ExperimentHub,
pROC
Imports:
mixtools
Description:
This package contain functions to run genomic instability analysis (GIA)
from scRNA-Seq data.
GIA estimates the association between gene expression and genomic location
of the coding genes.
It uses the aREA algorithm to quantify the enrichment of sets of
contiguous genes (loci-blocks) on the gene expression profiles and
estimates the Genomic Instability Score (GIS) for each analyzed cell.
License: file LICENSE
biocViews: SystemsBiology, GeneExpression, SingleCell
BiocType: Software
URL: https://github.com/DarwinHealth/genomicInstability
BugReports: https://github.com/DarwinHealth/genomicInstability
Encoding: UTF-8
ARoxygenNote: 7.1.1
RoxygenNote: 7.1.1
nturaga
reef103
lshep
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