bioc-issue-bot
commented
8 years ago Hi @BhaktiDwivedi
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: GISPA
Type: Package
Title: GISPA: Method for Gene Integrated Set Profile Analysis
Version: 0.99.0
Date: 2016-10-11
Author: Bhakti Dwivedi and Jeanne Kowalski
Maintainer: Bhakti Dwivedi <bhakti.dwivedi@emory.edu>
Description: GISPA is a method intended for the researchers who are interested
in defining gene sets with similar, a priori specified molecular profile. GISPA
method has been previously published in Nucleic Acid Research (Kowalski et al.,
2016; PMID: 26826710).
Depends:
R (>= 3.2),
genefilter,
changepoint
Imports:
data.table,
plyr,
ggplot2,
HH,
lattice,
latticeExtra,
scatterplot3d
License: GPL-2
LazyData: true
Collate:
'CopyChangeSet.R'
'ExpressionSet.R'
'VariantSet.R'
'computePer.R'
'bgfpsPer.R'
'cof.R'
'computePS.R'
'computePercentage.R'
'computeProp.R'
'succDiff.R'
'cptSamples.R'
'cptPlot.R'
'cptSlopeplot.R'
'filterRows.R'
'filterVars.R'
'getBoxPlot.R'
'wgfpsPer.R'
'readDATA.R'
'sortData.R'
'gispa1D.R'
'gispa2D.R'
'gispa3D.R'
'propBarplot.R'
'stackedBarplot.R'
Suggests:
knitr
VignetteBuilder: knitr
NeedsCompilation: no
RoxygenNote: 5.0.1
mtmorgan
BhaktiDwivedi
lawremi
LiNk-NY
marcel
Update the following URL to point to the GitHub repository of the package you wish to submit to Bioconductor
Confirm the following by editing each check box to '[x]'
[x] I understand that by submitting my package to Bioconductor, the package source and all review commentary are visible to the general public.
[x] I have read the Bioconductor Package Submission instructions. My package is consistent with the Bioconductor Package Guidelines.
[x] I understand that a minimum requirement for package acceptance is to pass R CMD check and R CMD BiocCheck with no ERROR or WARNINGS. Passing these checks does not result in automatic acceptance. The package will then undergo a formal review and recommendations for acceptance regarding other Bioconductor standards will be addressed.
[x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
[x] I am committed to the long-term maintenance of my package. This includes monitoring the support site for issues that users may have, subscribing to the bioc-devel mailing list to stay aware of developments in the Bioconductor community, responding promptly to requests for updates from the Core team in response to changes in R or underlying software.
I am familiar with the essential aspects of Bioconductor software management, including:
For help with submitting your package, please subscribe and post questions to the bioc-devel mailing list.