bioc-issue-bot
commented
2 years ago Hi @plger
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: scanMiRApp
Type: Package
Title: scanMiR shiny application
Version: 0.99.17
Date: 2021-07-06
Authors@R: c(
person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch",
role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
person("Michael", "Soutschek", email="michael.soutschek@hest.ethz.ch", role="aut"),
person("Fridolin", "Gross", email="fridolin.gross@hest.ethz.ch", role="ctb"))
Imports:
AnnotationDbi,
AnnotationFilter,
AnnotationHub,
BiocParallel,
Biostrings,
data.table,
digest,
DT,
ensembldb,
fst,
GenomeInfoDb,
GenomicFeatures,
GenomicRanges,
ggplot2,
htmlwidgets,
IRanges,
Matrix,
methods,
plotly,
rintrojs,
rtracklayer,
S4Vectors,
scanMiR,
scanMiRData,
shiny,
shinycssloaders,
shinydashboard,
stats,
utils,
waiter
Suggests:
knitr,
rmarkdown,
BiocStyle,
testthat (>= 3.0.0)
Description:
A shiny interface to the scanMiR package. The application enables the
scanning of transcripts and custom sequences for miRNA binding sites, the
visualization of KdModels and binding results, as well as browsing predicted
repression data. In addition contains the IndexedFst class for fast indexed
reading of large GenomicRanges or data.frames, and some utilities for
facilitating scans and identifying enriched miRNA-target pairs.
Depends: R (>= 4.0)
License: GPL-3
VignetteBuilder: knitr
RoxygenNote: 7.1.1
biocViews: miRNA, SequenceMatching, GUI
Config/testthat/edition: 3
plger
vjcitn
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[x] My package addresses statistical or bioinformatic issues related to the analysis and comprehension of high throughput genomic data.
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@lshep @vjcitn , following-up on the scanMiR submission, I guess it makes more sense if someone already familiar with the whole thing handles the review?