bioc-issue-bot
commented
3 years ago Hi @bschilder
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: orthogene
Type: Package
Title: Interspecies gene mapping
Version: 0.99.0
Authors@R:
c(
person(given = "Brian",
family = "Schilder",
role = c("cre"),
email = "brian_schilder@alumni.brown.edu",
comment = c(ORCID = "0000-0001-5949-2191"))
)
Description:
orthogene is an R package for easy mapping of orthologous genes across hundreds of species.
It pulls up-to-date interspecies gene ortholog mappings across 700+ organisms.
It also provides various utility functions to map common objects
(e.g. data.frames, gene expression matrices, lists)
onto 1:1 gene orthologs from any other species.
URL: https://github.com/neurogenomics/orthogene
BugReports: https://github.com/neurogenomics/orthogene/issues
License: Artistic-2.0
Depends: R (>= 4.1)
VignetteBuilder: knitr
biocViews:
Genetics, ComparativeGenomics, Preprocessing,
Phylogenetics, Transcriptomics, GeneExpression
Imports:
dplyr,
methods,
stats,
utils,
Matrix,
jsonlite,
homologene,
gprofiler2,
data.table,
parallel,
ggplot2,
ggpubr,
patchwork
Suggests:
remotes,
knitr,
BiocStyle,
markdown,
rmarkdown,
here,
DelayedArray,
DelayedMatrixStats,
Matrix.utils,
grr,
testthat (>= 3.0.0)
RoxygenNote: 7.1.1
Encoding: UTF-8
Config/testthat/edition: 3
lshep
bschilder
vjcitn
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