bioc-issue-bot
commented
3 years ago Hi @mrbakhsh
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: HPiP
Type: Package
Title: Host-Pathogen Interaction Prediction
Version: 0.99.7
Authors@R: c(
person("Matineh", "Rahmatbakhsh", ,"matinerb.94@gmail.com",c("aut","trl","cre")),
person("Mohan", "Babu", ,"mohan.babu@uregina.ca", c("led")))
Description: HPiP (Host-Pathogen Interaction Prediction) uses an ensemble learning
algorithm for prediction of host-pathogen protein-protein interactions (HP-PPIs)
using structural and physicochemical descriptors computed from amino
acid-composition of host and pathogen proteins.The proposed package can effectively address
data shortages and data unavailability for HP-PPI network reconstructions.
Moreover, establishing computational frameworks in that regard will reveal
mechanistic insights into infectious diseases and suggest potential HP-PPI targets,
thus narrowing down the range of possible candidates for subsequent wet-lab experimental validations.
Depends:
R (>= 4.1)
Imports:
dplyr (>= 1.0.6),
httr (>= 1.4.2),
readr,
tidyr,
tibble,
utils,
stringr,
magrittr,
caret,
corrplot,
ggplot2,
pROC,
PRROC,
igraph,
graphics,
stats,
purrr
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
Suggests:
knitr,
rmarkdown,
colorspace,
protr,
e1071,
randomForest,
gprofiler2,
gridExtra,
ggthemes,
kableExtra,
BiocStyle
biocViews:
Proteomics,
SystemsBiology,
NetworkInference,
StructuralPrediction,
GenePrediction,
Network
RoxygenNote: 7.1.1
lshep
mrbakhsh
vjcitn
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