bioc-issue-bot
commented
3 years ago Hi @nyzhoulang
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: ggmsa
Title: Plot Multiple Sequence Alignment using 'ggplot2'
Version: 0.99.0
Authors@R: c(person("Lang", "Zhou", email = "nyzhoulang@gmail.com", role = c("aut", "cre")),
person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "ths"), comment = c(ORCID = "0000-0002-6485-8781")),
person("Shuangbin", "Xu", email = "xshuangbin@163.com", role = "ctb"),
person("Huina", "Huang", email = "1185796994@qq.com", role = "ctb"))
Description: A visual exploration tool for multiple sequence alignment and associated data.
Supports MSA of DNA, RNA, and protein sequences using 'ggplot2'.
Multiple sequence alignment can easily be combined with other 'ggplot2' plots,
such as phylogenetic tree produced by 'ggtree', boxplot, genome map and so on.
More features:visualization of sequence logos, sequence bundles, RNA secondary structures and detection of sequence recombinations.
Depends: R (>= 4.1.0)
Imports:
Biostrings,
ggplot2,
magrittr,
tidyr,
utils,
stats,
stringr,
aplot,
RColorBrewer,
ggalt,
ggforce,
methods,
dplyr,
R4RNA,
grDevices,
grid
Suggests:
ggtreeExtra,
ggtree (>= 1.17.1),
ape,
cowplot,
knitr,
prettydoc,
rmarkdown,
seqmagick,
readxl,
ggnewscale,
kableExtra,
gggenes
License: Artistic-2.0
Encoding: UTF-8
biocViews: Software, Visualization, Alignment, Annotation,MultipleSequenceAlignment
RoxygenNote: 7.1.1
VignetteBuilder: knitr
jianhong
nyzhoulang
lshep
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