bioc-issue-bot
commented
2 years ago Hi @wenjie1991
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The DESCRIPTION file for this package is:
Package: CellBarcode
Type: Package
Title: Cellular DNA Barcode Analysis toolkit
Version: 0.99.3
Authors@R: c(
person("Wenjie", "Sun", email = "sunwjie@gmail.com", role = "cre"),
person("Anne-Marie", "Lyne", email = "Anne-Marie.Lyne@curie.fr", role = "aut"),
person("Leila", "Perie", email = "leila.perie@curie.fr", role = "aut")
)
Description:
This package performs Cellular DNA Barcode (genetic lineage tracing) analysis. The package can handle all kinds of DNA barcodes, as long as the barcode within a single sequencing read and has a pattern which can be matched by a regular expression. This package can handle barcode with flexible length, with or without UMI (unique molecular identifier). This tool also can be used for pre-processing of some amplicon data such as CRISPR gRNA screening, immune repertoire sequencing and meta genome data.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.0.0)
Imports: methods, Rcpp (>= 1.0.5), data.table (>= 1.14.0), plyr (>=
1.8.6), ggplot2 (>= 3.3.5), stringr (>= 1.4.0), magrittr (>=
2.0.1), ShortRead (>= 1.48.0), Biostrings (>= 2.58.0), egg (>=
0.4.5), Ckmeans.1d.dp (>= 4.3.3), utils, S4Vectors
LinkingTo: Rcpp
RoxygenNote: 7.1.1
Suggests: BiocStyle, testthat (>= 3.0.0), knitr, rmarkdown
biocViews: Preprocessing, QualityControl, Sequencing, CRISPR
Config/testthat/edition: 3
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2021-08-26 12:20:54 UTC; wsun
Author: Wenjie Sun [cre],
Anne-Marie Lyne [aut],
Leila Perie [aut]
Maintainer: Wenjie Sun <sunwjie@gmail.com>
nturaga
wenjie1991
lshep
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