bioc-issue-bot
commented
2 years ago Hi @ruqianl
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: comapr
Title: Crossover analysis for genetic map construction
Version: 0.99.25
Authors@R:
person(given = "Lyu",
family = "Ruqian",
role = c("aut", "cre"),
email = "ruqianl@student.unimelb.edu.au",
comment = c(ORCID = "0000-0002-7736-6612"))
Description: comapr detects crossover intervals for single cells from their
haplotype states matrices. The genetic distances can then be calculated via
the mapping functions for the list of SNP intervals. Visualisation functions
for plotting interval-based genetic map or cumulative genetic distances are
implemented, which help reveal the variation of crossovers landscape across
the genome and across individuals.
biocViews: Software, SingleCell, Visualization, Genetics
Depends:
R (>= 4.0)
Imports:
methods,
ggplot2,
reshape2,
dplyr,
gridExtra,
plotly,
circlize,
rlang,
GenomicRanges,
IRanges,
foreach,
BiocParallel,
GenomeInfoDb,
scales,
RColorBrewer,
tidyr,
S4Vectors,
utils,
Matrix,
grid,
stats,
SummarizedExperiment,
plyr,
Gviz
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
VignetteBuilder: knitr
Suggests:
BiocStyle,
knitr,
rmarkdown,
testthat (>= 2.1.0),
statmod
jianhong
ruqianl
lshep
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