bioc-issue-bot
commented
3 years ago Hi @bioinformatic-seragnoli
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: BOBaFIT
Type: Package
Title: Refitting diploid region profiles using a clustering procedure
Version: 0.99.0
Authors@R: c(person("Andrea", "Poletti", email="andrea.poletti5@gmail.com", role=c("aut")),
person("Gaia", "Mazzocchetti", email="bioinformatic.seragnoli@gmail.com", role=c("aut", "cre")),
person("Vincenza", "Solli", email="vincenza.solli2@unibo.it", role=c("aut")))
Description: This package provides a method to refit and correct the diploid region in copy number profiles. It uses a clustering algorithm to
identify pathology-specific normal (diploid) chromosomes and then use their copy number signal to refit the whole profile.
The package is composed by three functions: DRrefit (the main function), ComputeNormalChromosome and PlotCluster.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://github.com/andrea-poletti-unibo/BOBaFIT
BugReports: https://github.com/andrea-poletti-unibo/BOBaFIT/issues
Imports:
dplyr (>= 1.0.6),
NbClust (>= 3.0),
ggplot2 (>= 3.3.3),
ggbio (>= 1.38.0),
grDevices,
stats,
tidyr (>= 1.1.3),
GenomicRanges (>= 1.42.0),
ggforce (>= 0.3.3),
stringr (>= 1.4.0)
Suggests:
rmarkdown (>= 2.8),
markdown (>= 1.1),
BiocStyle (>= 2.18.1),
knitr (>= 1.33),
testthat (>= 3.0.0),
utils
Config/testthat/edition: 3
biocViews: CopyNumberVariation, Clustering, Visualization, Normalization, Software
Depends:
R (>= 4.0)
VignetteBuilder: knitr
LiNk-NY
bioinformatic-seragnoli
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