bioc-issue-bot
commented
3 years ago Hi @adeschen
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The DESCRIPTION file for this package is:
Package: CNVMetrics
Type: Package
Version: 0.99.0
Date: 2021-02-17
Title: Copy Number Variant Metrics
Description: The CNVMetrics package calculates similarity metrics to
facilitate copy number variant comparison among samples and/or methods.
Similarity metrics can be employed to compare CNV profiles of genetically
unrelated samples as well as those with a common genetic background.
Some metrics are based on the shared amplified/deleted regions while other
metrics rely on the level of amplification/deletion.
The data type used as input is a plain text file containing the genomic
position of the copy number variations, as well as the status and/or
the log2 ratio values.
Finally, a visualization tool is provided to explore resulting metrics.
Authors@R: c(person("Astrid", "Deschênes", email = "adeschen@hotmail.com",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0001-7846-6749")),
person("Pascal", "Belleau", email = "pascal_belleau@hotmail.com",
role = c("aut"),
comment = c(ORCID = "0000-0002-0802-1071")),
person(given="David A.", family="Tuveson",
email="dtuveson@cshl.edu", role = c("aut")),
person("Alexander", "Krasnitz", email = "krasnitz@cshl.edu",
role = c("aut")))
Encoding: UTF-8
License: Artistic-2.0
Depends: R (>= 4.1)
Imports: GenomicRanges,
IRanges,
S4Vectors,
BiocParallel,
methods,
magrittr,
stats,
pheatmap,
gridExtra,
grDevices
Suggests: BiocStyle,
knitr,
rmarkdown,
testthat
biocViews: BiologicalQuestion,
Software,
CopyNumberVariation
VignetteBuilder: knitr
URL: https://github.com/krasnitzlab/CNVMetrics,
https://krasnitzlab.github.io/CNVMetrics/
BugReports: https://github.com/krasnitzlab/CNVMetrics/issues
RoxygenNote: 7.1.1
nturaga
adeschen
lshep
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