bioc-issue-bot
commented
2 years ago Hi @devonjkohler
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Type: Package
Package: MSstatsLiP
Title: LiP Significance Analysis in shotgun mass spectrometry-based proteomic experiments
Version: 0.99.0
Date: 2021-09-21
Description: Tools for Post Translational Modification (PTM) and protein
significance analysis. Supports DDA, DIA, and tandem mass tag
(TMT) labeling. Provides functions for summarization, estimation
of PTM site abundance, and detection of changes in PTMs across
conditions.
Authors@R: c(person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = c("aut", "cre")),
person("Tsung-Heng", "Tsai", email = "tsai.tsungheng@gmail.com", role = "aut"),
person("Ting", "Huang", email = "thuang0703@gmail.com", role=c("aut")),
person("Mateusz", "Staniak", email = "mtst@mstaniak.pl", role = c("aut")),
person("Meena", "Choi", email = "mnchoi67@gmail.com", role="aut"),
person("Valentina", "Cappelletti", email = "valentina.cappelletti@imsb.biol.ethz.ch", role="aut"),
person("Liliana", "Malinovska", email = "malinovska@imsb.biol.ethz.ch", role="aut"),
person("Olga", "Vitek", email = "o.vitek@northeastern.edu", role = "aut"))
License: Artistic-2.0
Depends: R (>= 4.1)
Imports: dplyr, gridExtra, stringr, ggplot2, grDevices, MSstats, MSstatsConvert,
data.table, Biostrings, MSstatsPTM, Rcpp, checkmate, factoextra,
ggpubr, purrr, tibble, tidyr, tidyverse, scales
Suggests: BiocStyle, knitr, rmarkdown, covr, tinytest
LinkingTo: Rcpp
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software, DifferentialExpression,
OneChannel, TwoChannel, Normalization, QualityControl
BugReports: https://github.com/Vitek-Lab/MSstatsLiP/issues
Encoding: UTF-8
LazyData: TRUE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
LiNk-NY
devonjkohler
lshep
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