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3 years ago Hi @ncrna
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The DESCRIPTION file for this package is:
Package: Yeskit
Type: Package
Title: Yet Another Single-Cell Analysis Toolkit (Yeskit)
Version: 0.99.0
Date: 2021-09-25
Authors@R: person(given = "Wei", family = "Zhang", role = c("cre", "aut"), email = "admin@ncrna.net")
Description: This is a single-cell analysis tookit. It can be used for
single-cell gene expression matrices importation, data integration,
clustering, differential analysis, functional analysis, and
visualization. It obeys the default data structure of Seurat, and
stores pathogen expression data and pathway enrichment scores in
the obj@meta.data slot and stores differential gene analysis results
and GO enrichment results in the obj@misc slot. Besides, Yeskit has
the option to rasterize the geom_point layer of ggplot2, while keep
all axes, labels, and text in vector format.
Depends:
R (>= 3.6.0)
Imports:
utils,
stats,
grDevices,
Seurat (>= 3.0.0),
ggplot2 (>= 3.3.0),
cowplot (>= 1.0.0),
RColorBrewer (>= 1.1.2),
dplyr (>= 0.8.5),
harmony (>= 0.1.0),
topGO (>= 2.38.1),
org.Hs.eg.db (>= 3.10.0),
org.Mm.eg.db (>= 3.10.0),
methods (>= 3.6.0),
patchwork (>= 1.0.0),
ggrepel (>= 0.8.2),
Matrix (>= 1.2.18),
MASS (>= 7.3.51.5),
scales (>= 1.1.0),
gtable (>= 0.3.0),
ggrastr (>= 0.2.3),
msigdbr (>= 7.4.1),
RANN (>= 2.6.1)
Suggests:
testthat (>= 3.0.0),
knitr,
rmarkdown
biocViews: SingleCell, Clustering, GeneExpression, DifferentialExpression, GO, Annotation, Visualization, Software
VignetteBuilder: knitr
LazyData: true
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
BugReports: https://github.com/ncrna/Yeskit/issues
git_url: https://github.com/ncrna/Yeskit
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