bioc-issue-bot
commented
3 years ago Hi @kullrich
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: distSTRING
Type: Package
Title: distSTRING calculates pairwise distances between all sequences of a
DNAStringSet or a AAStringSet using a custom score matrix and conducts
codon based analysis
Version: 0.99.0
Authors@R:
person(given = "Kristian K",
family = "Ullrich",
role = c("aut", "cre"),
email = "ullrich@evolbio.mpg.de",
comment = c(ORCID = "0000-0003-4308-9626"))
Description: distSTRING calculates pairwise distances between all sequences of
a DNAStringSet or a AAStringSet using a custom score matrix and conducts
codon based analysis. It uses scoring matrices to be used in these pairwise
distance calcualtions which can be adapted to any scoring for DNA or AA
characters. E.g. by using literal distances distSTRING calcualtes pairwise
IUPAC distances.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews: Alignment, Sequencing, Genetics, GO
Depends:
R (>= 4.1.0)
Imports:
Rcpp,
RcppThread,
Biostrings,
ape,
doParallel,
dplyr,
foreach,
methods,
parallel,
rlang,
seqinr,
stringr,
tibble,
tidyr,
stats,
stringi
Suggests:
rmarkdown,
knitr,
devtools,
testthat
LinkingTo: Rcpp, RcppThread
VignetteBuilder: knitr
NeedsCompilation: yes
SystemRequirements: C++11
URL: https://gitlab.gwdg.de/mpievolbio-it/diststring, https://mpievolbio-it.pages.gwdg.de/diststring/
BugReports: https://gitlab.gwdg.de/mpievolbio-it/diststring/issues
RoxygenNote: 7.1.2
nturaga
kullrich
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