RTNduals

[chagasVinicius]

Dear Valerie (@vobencha),

Please find attached our revised package now renamed to RTNduals. I hope you will be able to continue the review process of our package, for which you have provided relevant suggestions.

Please let us know any questions.

Sincerely, Vinicius, Clarice and Mauro

• Repository: https://github.com/chagasVinicius/RTNduals

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[bioc-issue-bot]

Hi @chagasVinicius

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: RTNduals
Type: Package
Title: Co-regulation analysis and inference of 'dual regulons'
Version: 0.99.0
Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro
Maintainer: Vinicius Chagas <vinicius.chagas@ufpr.br>, Mauro Castro <mauro.castro@ufpr.br>, Clarice Groeneveld <clari.groeneveld@gmail.com>
Depends: R (>= 3.4), methods, RTN, graphics
Imports: grDevices, stats, utils
Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
Description: RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulon pairs agree on the predicted downstream effects.
License: Artistic-2.0
biocViews: GeneRegulation, GeneExpression, GeneticVariability, GeneSetEnrichment, NetworkEnrichment, NetworkInference, GraphAndNetwork
LazyData: TRUE
VignetteBuilder: knitr
RoxygenNote: 5.0.1

[bioc-issue-bot]

Your package has been approved for building. Your package is now submitted to our queue.

IMPORTANT: Please read the instructions for setting up a push hook on your repository, or further changes to your repository will NOT trigger a new build.

[chagasVinicius]

Dear Valerie (@vobencha) and Martin (@mtmorgan),

I could not linked the issue #226 with the new one as suggested. But I am following the suggested workflow to change the package name.

Sinceraly, Vinicius

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/RTNduals_buildreport_20170112111114.html

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

506c5db Fixing Tests error

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings on all platforms.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/RTNduals_buildreport_20170112112454.html

[bioc-issue-bot]

We only start builds when the Version field in the DESCRIPTION file is incremented. For example, by changing

Version: 0.99.0

to

Version 0.99.1

If you did not intend to start a build, you don't need to do anything. If you did want to start a build, increment the Version: field and try again.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

eadeaa9 update package name

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings on all platforms.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/RTNduals_buildreport_20170112113244.html

[bioc-issue-bot]

We only start builds when the Version field in the DESCRIPTION file is incremented. For example, by changing

Version: 0.99.0

to

Version 0.99.1

If you did not intend to start a build, you don't need to do anything. If you did want to start a build, increment the Version: field and try again.

[bioc-issue-bot]

Received a valid push; starting a build. Commits are:

2a30e0d Update DESCRIPTION

[bioc-issue-bot]

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings on all platforms.

Please see the following build report for more details:

http://bioconductor.org/spb_reports/RTNduals_buildreport_20170112114315.html

[vobencha]

Marking as approved. Review comments here.

@chagasVinicius , the package is approved. You'll get an email in the next week with svn credentials and instructions for next steps.

Valerie

[chagasVinicius]

Dear @vobencha,

Thank you for all the suggestions and help in this process.

Sincerely, Vinicius