bioc-issue-bot
commented
2 years ago Hi @Jfortin1
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: crisprBowtie
Version: 0.99.0
Date: 2021-12-17
Title: Bowtie-based alignment of CRISPR gRNA spacer sequences
Authors@R: c(
person("Jean-Philippe", "Fortin", email = "fortin946@gmail.com", role = c("aut", "cre")))
Depends:
methods
Imports:
Biostrings,
BSgenome,
crisprBase (>= 0.99.7),
IRanges,
GenomicRanges,
Rbowtie,
S4Vectors,
stats,
stringr,
utils
Suggests:
BiocStyle,
BSgenome.Hsapiens.UCSC.hg38,
knitr,
rmarkdown,
testthat
biocViews: CRISPR, FunctionalGenomics, Alignment
Description: Provides a user-friendly interface to map on-targets and off-targets
of CRISPR gRNA spacer sequences using bowtie. The alignment is fast,
and can be performed using either commonly-used or custom CRISPR nucleases.
The alignment can work with any reference or custom genomes.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.2
VignetteBuilder: knitr
BugReports: https://github.com/Jfortin1/crisprBowtie/issues
URL: https://github.com/Jfortin1/crisprBowtie
vjcitn
Jfortin1
lshep
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