bioc-issue-bot
commented
2 years ago Hi @mcjmigdal
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: xcore
Title: xcore expression regulators inference
Version: 0.99.0
Authors@R:
c(person(given = "Maciej",
family = "Migdał",
role = c("aut", "cre"),
email = "mcjmigdal@gmail.com",
comment = c(ORCID = "0000-0002-8021-7263")),
person(given = "Bogumił",
family = "Kaczkowski",
role = c("aut"),
email = "mcjmigdal@gmail.com",
comment = c(ORCID = "0000-0001-6554-5608"))
)
Description: xcore is an R package for transcription factor activity modeling
based on known molecular signatures and user's gene expression data.
Accompanying xcoredata package provides a collection of molecular signatures,
constructed from publicly available ChiP-seq experiments.
License: GPL-2
Encoding: UTF-8
LazyData: false
LazyDataCompression: bzip2
Depends:
R (>= 4.1)
Imports:
DelayedArray (>= 0.18.0),
edgeR (>= 3.34.1),
foreach (>= 1.5.1),
GenomicRanges (>= 1.44.0),
glmnet (>= 4.1.2),
IRanges (>= 2.26.0),
iterators (>= 1.0.13),
magrittr (>= 2.0.1),
Matrix (>= 1.3.4),
methods (>= 4.1.1),
MultiAssayExperiment (>= 1.18.0),
stats,
S4Vectors (>= 0.30.0),
utils
Suggests:
BiocGenerics (>= 0.38.0),
data.table (>= 1.14.0),
devtools (>= 2.4.2),
digest (>= 0.6.28),
doMC (>= 1.3.7),
KernSmooth (>= 2.23.20),
knitr (>= 1.36),
pheatmap (>= 1.0.12),
proxy (>= 0.4.26),
ridge (>= 3.0),
rmarkdown (>= 2.11),
rtracklayer (>= 1.52.0),
testthat (>= 3.0.0),
usethis (>= 2.0.1),
xcoredata (>= 0.0.0.9000)
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Config/testthat/edition: 3
biocViews: GeneExpression, GeneRegulation, Epigenetics, Regression, Sequencing
vjcitn
mcjmigdal
lshep
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