bioc-issue-bot
commented
2 years ago Hi @lgatto
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: PSMatch
Title: Handling and Managing Peptide Spectrum Matches
Version: 0.99.0
Authors@R:
c(person(given = "Laurent", family = "Gatto",
email = "laurent.gatto@uclouvain.be",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-1520-2268")),
person(given = "Johannes", family = "Rainer",
email = "Johannes.Rainer@eurac.edu",
role = "aut",
comment = c(ORCID = "0000-0002-6977-7147")),
person(given = "Sebastian", family = "Gibb",
email = "mail@sebastiangibb.de",
role = "aut"),
person(given = "Samuel", family = "Wieczorek",
email = "samuel.wieczorek@cea.fr",
role = "ctb"),
person(given = "Thomas", family = "Burger",
email = "thomas.burger@cea.fr",
role = "ctb"))
Description: The PSMatch package helps proteomics practitioners to
load, handle and manage Peptide Spectrum Matches. It provides
functions to model peptide-protein relations as adjacency matrices
and connected components, visualise these as graphs and make
informed decision about shared peptide filtering. The package also
provides functions to calculate and visualise MS2 fragment ions.
Depends:
S4Vectors
Imports:
utils,
stats,
igraph,
methods,
Matrix,
BiocParallel,
BiocGenerics,
ProtGenerics (>= 1.27.1),
QFeatures,
MsCoreUtils
Suggests:
msdata,
rpx,
mzID,
mzR,
Spectra,
SummarizedExperiment,
BiocStyle,
rmarkdown,
knitr,
factoextra,
testthat
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/PSM/issues
URL: https://github.com/RforMassSpectrometry/PSM
biocViews: Infrastructure, Proteomics, MassSpectrometry
lgatto
lshep
Kayla-Morrell
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