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ATACCoGAPS #2557

Closed rossinerbe closed 2 years ago

rossinerbe commented 2 years ago

Confirm the following by editing each check box to '[x]'

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rossinerbe commented 2 years ago

@Kayla-Morrell should be ready for re-review. With the caveat that I had to remove the suggested changes to NAMESPACE as these created an error in the build check above. Let me know if this is a problem

rossinerbe commented 2 years ago

@Kayla-Morrell do I need to do anything for the review process at this point?

Kayla-Morrell commented 2 years ago

@rossinerbe - Sorry for the delay in posting my re-review comments. There are two points that need to be addressed before I can accept the package, see below. Please respond with any comments.

NAMESPACE

Man pages

Best, Kayla

bioc-issue-bot commented 2 years ago

Received a valid push on git.bioconductor.org; starting a build for commit id: 5d651105b59b007d8836f9ce90651d533ea61fee

bioc-issue-bot commented 2 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "WARNINGS". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/ATACCoGAPS to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

rossinerbe commented 2 years ago

Okay, I have made those changes. Changing from dontrun to donttest seems to lead to WARNING: R CMD check exceeded 10 min requirement (I'm not sure why) which is why I hadn't done it previously, but if it's required we can include it

Kayla-Morrell commented 2 years ago

@rossinerbe - Interesting, I'm not sure why that would cause an issue. If you want to switch that back to avoid the WARNING I'd allow it. Thank you for making the changes, I'm more than happy to accept the package.

Best, Kayla

bioc-issue-bot commented 2 years ago

Your package has been accepted. It will be added to the Bioconductor nightly builds.

Thank you for contributing to Bioconductor!

Reviewers for Bioconductor packages are volunteers from the Bioconductor community. If you are interested in becoming a Bioconductor package reviewer, please see Reviewers Expectations.

lshep commented 2 years ago

The master branch of your GitHub repository has been added to Bioconductor's git repository.

To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/rossinerbe.keys is not empty), then no further steps are required. Otherwise, do the following:

  1. Add an SSH key to your github account
  2. Submit your SSH key to Bioconductor

See further instructions at

https://bioconductor.org/developers/how-to/git/

for working with this repository. See especially

https://bioconductor.org/developers/how-to/git/new-package-workflow/ https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

to keep your GitHub and Bioconductor repositories in sync.

Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at

https://bioconductor.org/checkResults/

(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using BiocManager::install("ATACCoGAPS"). The package 'landing page' will be created at

https://bioconductor.org/packages/ATACCoGAPS

If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.