bioc-issue-bot
commented
2 years ago Hi @bhuvad
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: ExperimentList
Title: S4 Class for handling lists of Experiments
Version: 0.99.0
Authors@R:
person(given = "Dharmesh D.",
family = "Bhuva",
role = c("aut", "cre"),
email = "bhuva.d@wehi.edu.au",
comment = c(ORCID = "0000-0002-6398-9157"))
Description: The ExperimentList package defines S4 classes to handle data from
multiple experiments or studies by providing features of lists as well as those
of a concatenated experiment. Individual experiments can be in the form of
SummarizedExperiment, Ranged SummarizedExperiment, SingleCellExperiment, or
SpatialExperiment objects. Annotations specific to each experiment are stored
thus providing a unified interface to dealing with data from multiple studies.
Specialised functions to access experiment data, and to apply functions across
experiments are implemented. Existing functions implemented for each individual
experiment (e.g., SingleCellExperiment::reducedDim()) can be readily applied
across the entire list of experiments.
biocViews: DataRepresentation, GeneExpression, Infrastructure, SingleCell, Spatial
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Depends:
R (>= 4.1),
S4Vectors,
SingleCellExperiment,
SpatialExperiment,
SummarizedExperiment
Imports:
BiocGenerics,
methods
Suggests:
rmarkdown,
knitr,
testthat (>= 3.0.0),
BiocStyle,
prettydoc,
GenomicRanges,
ExperimentHub,
TENxVisiumData
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://davislaboratory.github.io/ExperimentList
BugReports: https://github.com/DavisLaboratory/ExperimentList/issues
lgatto
bhuvad
PeteHaitch
LiNk-NY
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