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biodbExpasy extension package for biodb #2564

Closed pkrog closed 2 years ago

pkrog commented 2 years ago

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bioc-issue-bot commented 2 years ago

Hi @pkrog

Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: biodbExpasy
Title: biodbExpasy, a library for connecting to Expasy ENZYME database.
Version: 0.99.0
Authors@R: 
    c(person(given = "Pierrick",
   family = "Roger",
   role = c("aut", "cre"),
   email = "pierrick.roger@cea.fr"))
Description: The biodbExpasy library provides access to Expasy ENZYME database,
    using biodb package framework.  It allows to retrieve entries by their
    accession number. Web services can be accessed for searching the database
    by name or comments.
License: AGPL-3
biocViews: Software, Infrastructure, DataImport
VignetteBuilder: knitr
Encoding: UTF-8
Depends: 
    R (>= 4.1)
Imports: 
    biodb (>= 1.3.1),
    R6,
    stringr,
    chk
Suggests: 
    roxygen2,
    BiocStyle,
    testthat (>= 2.0.0),
    devtools,
    knitr,
    rmarkdown,
    covr,
    lgr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Collate:
    'ExpasyEnzymeConn.R'
    'ExpasyEnzymeEntry.R'
    'package.R'
bioc-issue-bot commented 2 years ago

A reviewer has been assigned to your package. Learn what to expect during the review process.

IMPORTANT: Please read this documentation for setting up remotes to push to git.bioconductor.org. It is required to push a version bump to git.bioconductor.org to trigger a new build.

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bioc-issue-bot commented 2 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

On one or more platforms, the build results were: "ERROR". This may mean there is a problem with the package that you need to fix. Or it may mean that there is a problem with the build system itself.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/biodbExpasy to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot commented 2 years ago

Received a valid push on git.bioconductor.org; starting a build for commit id: 6197b5b7e4b39dc4350c78b1f0584d4c14980303

bioc-issue-bot commented 2 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings on all platforms.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/biodbExpasy to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot commented 2 years ago

Received a valid push on git.bioconductor.org; starting a build for commit id: f5ff16c27f1bf2c212ae59695120d6f2fcbf4e51

bioc-issue-bot commented 2 years ago

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on Linux, Mac, and Windows.

Congratulations! The package built without errors or warnings on all platforms.

Please see the build report for more details. This link will be active for 21 days.

Remember: if you submitted your package after July 7th, 2020, when making changes to your repository push to git@git.bioconductor.org:packages/biodbExpasy to trigger a new build. A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot commented 2 years ago

Your package has been accepted. It will be added to the Bioconductor nightly builds.

Thank you for contributing to Bioconductor!

Reviewers for Bioconductor packages are volunteers from the Bioconductor community. If you are interested in becoming a Bioconductor package reviewer, please see Reviewers Expectations.

lshep commented 2 years ago

The master branch of your GitHub repository has been added to Bioconductor's git repository.

To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/pkrog.keys is not empty), then no further steps are required. Otherwise, do the following:

  1. Add an SSH key to your github account
  2. Submit your SSH key to Bioconductor

See further instructions at

https://bioconductor.org/developers/how-to/git/

for working with this repository. See especially

https://bioconductor.org/developers/how-to/git/new-package-workflow/ https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

to keep your GitHub and Bioconductor repositories in sync.

Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at

https://bioconductor.org/checkResults/

(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using BiocManager::install("biodbExpasy"). The package 'landing page' will be created at

https://bioconductor.org/packages/biodbExpasy

If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.