bioc-issue-bot
commented
2 years ago Hi @genomaths
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: GenomAutomorphism
Title: Compute the automorphisms between DNA's Abelian group representations
Version: 0.99.0
Authors@R:
person( given = "Robersy",
family = "Sanchez",
role = c("aut", "cre"),
email = "genomicmath@gmail.com",
comment = c(ORCID = "0000-0002-5246-1453"))
URL: https://github.com/genomaths/GenomAutomorphism
BugReports: https://github.com/genomaths/GenomAutomorphism/issues
Description:
This is a R package to compute the autimorphisms between pairwise
aligned DNA sequences represented as elements from a Genomic
Abelian group. In a general scenario, from genomic regions till
the whole genomes from a given population (from any species or
close related species) can be algebraically represented as a
direct sum of cyclic groups or more specifically Abelian p-groups.
Basically, we propose the representation of multiple sequence
alignments of length N bp as element of a finite Abelian group
created by the direct sum of homocyclic Abelian group of
prime-power order.
Depends:
R (>= 4.2)
License: Artistic-2.0
Encoding: UTF-8
biocViews:
MathematicalBiology,
ComparativeGenomics,
FunctionalGenomics,
MultipleSequenceAlignment
Imports:
Biostrings,
BiocGenerics,
BiocParallel,
GenomeInfoDb,
GenomicRanges,
IRanges,
dplyr,
data.table,
parallel,
doParallel,
foreach,
methods,
S4Vectors,
stats,
numbers
RoxygenNote: 7.1.2
Suggests:
spelling,
rmarkdown,
knitr,
BiocStyle,
testthat (>= 3.0.0)
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Language: en-US
LazyData: true
Config/testthat/edition: 3
vjcitn
genomaths
lshep
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