bioc-issue-bot
commented
2 years ago Hi @rx-li
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: EasyCellType
Title: Annotate cell types for scRNA-seq data.
Version: 0.99.0
Authors@R: c(
person(given="Ruoxing", family="Li", email="ruoxingli@outlook.com", role=c("aut", "cre", "ctb")),
person(given="Ziyi", family="Li", email="zli16@mdanderson.org", role="ctb"))
Description: We developed EasyCellType that can automatically examine the input marker lists obtained from existing software such as Seurat over the cell marker databases. Two quantification approaches to annotate cell types are provided: Gene set enrichment analysis (GSEA) and a fisher exact test combining with expression significance.
License: Artistic-2.0
RoxygenNote: 7.2.0
Encoding: UTF-8
Depends: R (>= 4.1.0)
biocViews: SingleCell, Software, GeneExpression, GeneSetEnrichment
Imports: clusterProfiler, dplyr, forcats, ggplot2
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
jianhong
rx-li
lshep
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