bioc-issue-bot
commented
2 years ago Hi @SPirrotta
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: signifinder
Type: Package
Title: A collection of signatures
Version: 0.99.0
Authors@R: c(person("Stefania", "Pirrotta", role = c("cre", "aut"),
email = "stefania.pirrotta@studenti.unipd.it"),
person("Enrica", "Calura", role = "aut",
email = "enrica.calura@unipd.it"))
Description: signifinder is an R package for computing and exploring a
compendium of tumor signatures. It allows computing signatures
scores providing the only gene expression values and returns a
single-sample score. Currently, signifinder contains 46 distinct
signatures collected from the literature.
License: AGPL-3
Imports: ggplot2, org.Hs.eg.db, patchwork, AnnotationDbi, BiocGenerics,
ComplexHeatmap, DGEobj.utils, GSVA, IRanges, SummarizedExperiment,
consensusOV, dplyr, ensembldb, ggridges, grid, magrittr, matrixStats,
maxstat, methods, openair, parallel, TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, stats, survival, survminer, viridis
Encoding: UTF-8
RoxygenNote: 7.2.0
Depends: R (>= 4.2.0)
LazyData: true
Suggests: BiocStyle, knitr, testthat (>= 3.0.0), edgeR, limma
Config/testthat/edition: 3
VignetteBuilder: knitr
biocViews: GeneExpression
lshep
nilseling
SPirrotta
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