bioc-issue-bot
commented
2 years ago Hi @gartician
Thanks for submitting your package. We are taking a quick look at it and you will hear back from us soon.
The DESCRIPTION file for this package is:
Package: CITEViz
Title: CITEViz
Version: 0.99.0
Authors@R: c(
person('Garth', 'Kong', email = 'kongga2017@gmail.com', role = c('cre', 'aut'), comment = c(ORCID = '0000-0001-5262-5406')),
person('Thai', 'Nguyen', email = 'tnguye14@uoregon.edu', role = 'aut', comment = c(ORCID = '0000-0002-8988-4003')),
person('Wesley', 'Rosales', email = 'wesleykrosales@gmail.com', role = 'aut', comment = c(ORCID = '0000-0002-6381-9844')),
person('Anjali', 'Panikar', email = 'anjali.panikar@gmail.com ', role = 'aut', comment = c(ORCID = '0000-0002-5740-807X')),
person('John', 'Cheney', email = 'John.h.cheney@gmail.com', role = 'aut', comment = c(ORCID = '0000-0001-6194-2745')),
person('Sarah', 'Carratt', email = 'carratt@ohsu.edu', role = 'rev', comment = c(ORCID = '0000-0003-2493-6789')),
person('Brittany', 'Curtiss', email = 'curtisbr@ohsu.edu', role = 'rev', comment = c(ORCID = '0000-0002-5274-8323')),
person('Theodore', 'Braun', email = 'braunt@ohsu.edu', role = 'rev', comment = c(ORCID = '0000-0002-6248-2143')),
person('Julia', 'Maxson', email = 'maxsonj@ohsu.edu', role = 'rev', comment = c(ORCID = '0000-0002-3871-7221'))
)
Description: CITEViz is a single-cell visualization platform with a custom module that replicates the interactive flow cytometry workflow in CITE-Seq. Users can can isolate cell populations of interest using the protein assay in CITE-Seq with minimal computational training. Additional features of CITEViz includes assessment of quality control metrics, feature visualization (feature expression and co-expression), and evaluation of clusters.
License: MIT + file LICENSE
Imports:
bslib,
config (>= 0.3.1),
dplyr,
DT,
ggplot2,
golem (>= 0.3.1),
grDevices,
magrittr,
methods,
plotly,
rlang,
SeuratObject,
shiny (>= 1.6.0),
stats,
tibble,
vembedr
Encoding: UTF-8
RoxygenNote: 7.2.0
Suggests:
knitr,
BiocStyle,
rmarkdown,
spelling,
testthat (>= 3.0.0)
Config/testthat/edition: 3
Language: en-US
VignetteBuilder: knitr
biocViews: SingleCell, ShinyApps, FlowCytometry, QualityControl, GeneExpression
vjcitn
gartician
PeteHaitch
lshep
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